Paramisgurnus dabryanus (large-scale loach): 135775414
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Entry
135775414 CDS
T10799
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
135775414
NCBI-ProteinID:
XP_065141661
LinkDB
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Position
19:complement(32163..119464)
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AA seq
1622 aa
AA seq
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MEFRFGFRILLVLTALTLTLFGGGVEGQRAGCKNVHYDLVFILDTSSSVGKENFEKIRQW
VAKLVESFEVGVDKTRVAVVRYSDRPTAEFNLGRYKNLEEVKRAAGNIRYLGGNTKTGDA
ISFTTNNIFTERAGARPAAKGFQKVAILLTDGKSQDFVLEPSLAAAAAGIRMFAVGIGEA
LREELEEIGAEPKNAHVFHVTDFDAIDKIRGRLRRRLCENVLCPNMKVQAGRFRKNSTSA
GQTEVPGFDLMEYFNVRDFLGEKFEPGQTPYVRLGTMPIVQKTEDVLSQGLPDEYAFVTT
FKFRKTSRKEDWYLWQVYDKYGIPQVSIRLDGENRAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIGMRVDSKSVSLFLDCKHIETIPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMVIYCDGKQAEQETCCDIPGGPCEQTLVTEAPPLPLPTPKSTSAEQQKPATFNCSCPA
GERGQTGPPGDTGPRGEKGDPGLRGAEGPPGLKGQKGERGQAVSIKGDRGEKGDRGEQGE
PGDRGDRGERGLDGLPGLSGKPGDKGERGDRGHTGEAGSPGPLGLKGVQGDAGPPGKPGA
QGVSGSAGVKGEKGMPGDRGESGLDGFPGKPGVPGKDGLRGLTGAPGSSGVKGEKGAQGL
PGIPGNAVQLEGLKGETGIPGASGPPGADGPPGPPGPPGPQGFPGEPGENGQRGKKGEAG
LPGVDGLPGPPGPQGPPGLSGSPGKTGPPGLPGEIGFSGKPGEPGKPGLPGKDGVDGFPG
NDGEKGQRGEPGQDGFPGKLGPKGEEGPPGPRGPSGERGEPGLPGEVGLLGSKGERGEQG
ERGRDGLLGPKGDKGDKGEVGPRGPAGIPGNVANVIPEPGEPGNPGEKGEKGDQGKPGET
GQRGLPGEQGFRGQPGLPGPKGDAGDKGEAGRNGDPGPPGLMGPQGLRGLPGNAGIPGSI
GPPGIAGQRGEKGDAGKDGPSGPPGPNGEPGLRGEIGLPGKGKDGQKGDTGPPGPAGTPG
LRGLPGPQGVQGMTGARGPAGEGTTGPPGPPGPSGPTGAAGLRGPPGVTGPQGPAGHNGL
PGRPGEKGSPGEPGKAVDPSDLDLKGICSDCPAGPAGPPGIPGAPGEKGQNGPPGKNGQD
GYPGPPGPTGSSGPPGAEGAKGIKGDRGPGGNPGDKGEKGPPGPPGYPGAAGAMGAPGND
GNPGPVGPPGSPGEKGKEGLTGIQGPPGLPGLMGMIGKPGKDGRPGEQGEAGKQGEPGAP
GRDGLRGMPGFKGHRGEPGPPGSKGEEGKQGAPGREGSPGKDGKTGPAGAEGMRGPRGES
GQPGEPGPAGKPGSQGNPGQPGNKGEAGSPGLPGFSGPKGPSGLPGPIGPEGKQGMPGQS
GDRGHKGDKGDNGIKGDKGPVGDPGIPGNPGPPGRKGHTGMMGMSGPPGEVGPSGPPGTP
GHPGLPGIRGETPSQEQLRRLIQEELSKQLDAKLAYLMAQMQPAHIKSTAGRPGPPGPPG
KDGSPGRQGPPGESGMPGQNGAEGPRGPLGPKGERGARGEKGEDGVGQRGEPGPTGPIGP
AGMPGYGKDGLPGAAGAQGEPGNPGPHGQPGPSGPPGQCDPSQCAYYASLASRPHTKNVK
GT
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggagtttcgatttgggttcaggatccttttggtcctgaccgcactgactctgacacta
tttggaggaggtgttgaaggtcaaagggcagggtgcaaaaacgtccactatgatctggtc
ttcattttggatacatcctcgagtgtgggcaaggaaaactttgagaagatccgtcagtgg
gtggcaaaactggtggaatcgtttgaagtaggtgtggataaaacgcgtgtggccgttgtt
cgctatagcgaccggcccaccgccgaattcaacctgggcaggtacaaaaacctcgaggag
gtcaagcgtgccgctggaaacattcgctacttgggtgggaacaccaagacgggagacgcc
atcagcttcaccaccaacaacatcttcacggaaagagcgggagcacggcccgcagccaaa
ggttttcagaaagtggccatcttactaacggacggcaagagtcaagatttcgttcttgag
ccgtctttagccgccgcggctgctggaatcagaatgttcgctgtggggatcggagaagct
ctcagagaggaactggaggagatcggagcagagcccaaaaacgctcatgtgtttcacgtg
acggacttcgatgccattgataaaatcagggggagattgaggaggagactctgcgagaat
gtcctgtgtcccaacatgaaggtccaggctggtcgcttcaggaaaaacagcaccagtgca
ggacagacagaggtcccaggttttgatttgatggagtacttcaacgtgagagattttctg
ggggaaaagtttgagcccggtcagaccccctatgtcaggctcgggacaatgccaattgtc
caaaaaacagaagatgtgttatctcaaggtctgcctgatgaatacgcctttgtgacaaca
tttaagttcaggaaaacgtctcgtaaggaagactggtacctgtggcaggtctatgacaaa
tacggcattcctcaggtctccatccgtctggatggtgagaacagagcagtggagtacaac
gcagtgggtcttactaaggatgcggtccgggccgtctttaagaacccagaggtggacaac
ctgtttgaccgtaactggcataaaattggcatgagggtggactcaaaatcagtgtcgctc
ttcctggactgcaaacatattgagacgatacctatagaagacagagaagatatcgatatc
cagggaaagactgtcatcggaaagagactctatgacagcgttccgattgattttgacctc
caaagaatggtcatctactgtgatggtaaacaagccgaacaggagacatgctgcgatatt
cccggtggtccatgtgaacaaactctggtgaccgaggctcccccgctcccattgcccacc
ccaaaatccaccagtgctgaacagcagaaaccagcaacattcaactgctcctgtcctgca
ggggaaaggggtcagacaggccctccgggtgacacagggcccaggggtgaaaagggtgat
cctggtcttagaggggccgagggaccgccaggactcaaaggccagaaaggagagcgtggt
caggctgtctctatcaaaggtgatagaggagaaaagggggacagaggtgagcagggtgaa
cctggagacagaggagacaggggagagagaggtttagatggtttaccaggtctttctggg
aaaccaggcgataaaggagaaagaggtgatagaggacatacgggtgaagccgggtcacct
ggacctctcggactaaagggtgtccaaggtgatgctggtcctccaggaaaaccaggtgct
cagggcgtctctggcagcgcaggagtaaaaggagaaaaaggaatgcctggagataggggt
gagtcgggactagacgggtttccagggaaacctggagttccaggaaaagatggtctcagg
gggttaactggtgctcctggttcaagtggagtcaaaggagaaaagggagcacaagggctt
cctggaatacctggaaatgcggttcaactggaagggctcaagggggaaactggcatccct
ggtgcatcaggaccaccaggagcagacggcccacccggaccacctggcccacctggaccc
caaggtttccccggagaacctggcgagaatggacaaaggggaaagaaaggagaggcggga
ttgcctggagtcgatggacttcctggaccacctggccctcagggacctcccggactttca
ggcagcccaggaaagacagggccacccgggttacctggtgaaattggattctcaggaaaa
ccaggagaacccggaaaaccaggcctgccaggaaaggatggagtggatggtttccctgga
aatgatggcgagaagggacaaagaggagaacctggacaagatggatttcctggcaagctt
ggaccaaagggagaagaaggccctccaggaccacgaggaccttcaggtgaacggggagag
cctggtttacctggtgaagtaggcctattgggatccaaaggagagagaggagaacaggga
gaaagaggaagagatggactacttgggccaaaaggagataagggagacaagggggaagtt
ggccccaggggaccagcaggtatcccaggaaatgtggccaatgtgattcctgaaccaggt
gaaccggggaaccctggagaaaagggagagaaaggagaccaaggaaaaccaggggagacg
ggtcagagaggtcttccgggtgagcaaggattcagaggacagccaggacttccgggacct
aaaggtgatgcaggtgataagggagaagccgggagaaatggagacccaggtccgccagga
ttgatgggccctcaggggcttcgagggctgccaggcaatgcgggtattccagggagtatt
ggtccacctggtattgctgggcagagaggggagaagggtgatgcaggcaaagatggacct
agtggaccacctggtccaaacggtgagcctggtttaagaggagaaatcggtttaccagga
aaaggcaaagatgggcaaaagggtgacacaggacctccgggcccggctggaactccagga
ctgagaggtttgccaggtccacagggagtgcaggggatgacaggagccagaggtcctgct
ggagaggggaccaccggacccccaggtccacctggaccttcggggccaactggagcagcg
ggtttaagaggacctccaggtgtgaccggaccacaaggccctgctggacataacggtttg
cctggaagacctggagaaaagggctcgcctggagaaccgggaaaagctgtagatccttct
gatctagacctgaagggcatttgttcagattgtcctgcaggaccggctggacctcccggt
attccaggagctccaggagaaaaaggtcaaaatggaccacccggtaaaaacgggcaagat
ggatatccggggccacctggaccaactggatcttcaggaccacctggtgctgaaggagcc
aaggggattaaaggtgacagaggtccaggaggaaaccctggagataaaggagaaaaggga
cctccaggacctcctggttatccaggggccgcaggtgccatgggcgcacctggtaatgat
ggaaacccagggcctgttggaccacctggatcacctggtgaaaagggtaaagagggtctg
acgggaatccagggacctccaggactgccaggtctgatgggcatgatagggaaacccgga
aaagatggaagaccaggagaacaaggagaggcgggcaaacagggtgaacctggagcacca
ggcagagatggacttagaggaatgcctggtttcaaaggtcatagaggagaaccaggacct
ccagggtcaaagggtgaggaggggaagcagggcgctcccgggcgtgaaggctcacctgga
aaagatggtaagacaggacctgcgggggcagagggcatgcgaggaccgcgaggagaatcg
ggtcaacctggggaaccaggacctgcgggcaaacccggatctcagggaaatcctggtcag
ccaggaaacaaaggtgaagcgggtagtccaggattacctggattttcaggtcctaaaggg
ccgtcgggtctaccaggtccaattggcccagagggaaaacaaggtatgccaggacaatca
ggggacagggggcacaagggagataaaggtgataatggaatcaaaggtgacaaaggaccc
gttggagatccgggcattccaggtaaccctgggcctccaggcagaaagggtcacacaggg
atgatgggtatgtctggacctccgggtgaagttggtccttcaggtccccctgggacccca
ggacatccaggtctcccaggaatcagaggtgaaacgccatctcaggaacaattgcggaga
ctcattcaagaggaactttccaaacaattagatgctaagttggcctacctcatggctcaa
atgcagcccgcacatataaaaagcacagccgggcgtcccggtcctcctggtccaccagga
aaagatggatctcctggccgacaaggcccaccaggagagtctggaatgccaggacaaaat
ggagcagaaggtcccagaggtccattgggccccaaaggtgaacgaggagcaagaggtgaa
aagggagaggatggtgttgggcagagaggggagccaggtcccactggtcccattggtcct
gcaggtatgccgggatatggaaaagacggtcttcctggagcggcgggagctcagggagag
cctggtaatccaggtcctcacggtcagcccggaccatcaggaccacccgggcagtgtgac
ccttcacagtgtgcttactacgccagcctggcatcacgacctcacaccaaaaacgtcaag
gggacttaa
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