Paramisgurnus dabryanus (large-scale loach): 135776388
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Entry
135776388 CDS
T10799
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03008
Ribosome biogenesis in eukaryotes
pdab03013
Nucleocytoplasmic transport
pdab03015
mRNA surveillance pathway
pdab05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135776388 (nxf1b)
03015 mRNA surveillance pathway
135776388 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
135776388 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
135776388 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135776388 (nxf1b)
03009 Ribosome biogenesis [BR:
pdab03009
]
135776388 (nxf1b)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135776388 (nxf1b)
mRNA cycle factors
Stress granule specific factors
135776388 (nxf1b)
Ribosome biogenesis [BR:
pdab03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
135776388 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
UBA_8
LRR_9
LRR_4
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
135776388
NCBI-ProteinID:
XP_065143130
LinkDB
All DBs
Position
18:complement(17616445..17632093)
Genome browser
AA seq
634 aa
AA seq
DB search
MATADDSRYYNEHDDRVGGTKHRNRKGRGPFRAPMYSDQMSRPKHRGGHGGGGGPNPRSR
LHDDDGDVTMSEGSQDSTSQRRFNPYGRSNRHDRNRKGGRGGGNGDNGGHRSHGSRGGGL
GGFGGGDGNRKNWFKMTIPYGKKYDKDWLLTSLQNVCSMPFHAVQYHTDGNKAQFYVEDS
TTANALVKVSRKITDKDGYKVTVIMNGCPPPTLIHSDLKPEDLEHLKQCMAKRFDGSQQA
LDLNNIRIDPDLVSQNIEVTLNRRNSMLGAIKIIEENIPELVCLNLSNNRLFRLDDLAEI
VNKVPNLKILNLSHNELKTERELDKLKGLKLVDLSLEGNPMCNHFKDQVDYVSAIRERFP
KLLKLDGHDLPPPIGFDLEVAPATLPPCKPSYFSSDEIKSIILCFLQQYYSIYDSGDRQP
LLDAYHDGATFSLSIPFSLQNPAKSSLGEYQKDSRNIKRLKDPSMRFRLLKHTRLNVVAF
LNELPKTQHDIASFNVDVNTYTATLLAFTVTGVFKEVEGKSRDSYRSFSRVFIAVPAGNT
GLCIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLAAFSLKSGMNLEWS
QKCLQDNDWDFERAGQIFTGLKAQGKIPDVAFVK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcagacgactctcgctattataatgagcacgatgaccgtgttggaggaaca
aagcatcgaaaccgcaaaggcaggggtcctttcagagctccaatgtacagtgatcagatg
tccagaccgaaacatcgtggtggtcatggtgggggcggaggacctaatccgcggtcgaga
ttgcatgatgatgatggagatgtaaccatgtcggaaggttcacaggacagcacctctcag
cgcagatttaatccctacggccggtcgaatcgtcatgatcgcaatcgtaaaggaggacgg
ggaggtggaaatggagataatgggggtcacagaagtcatggatccagaggcggtggtctt
ggtggttttggtggtggtgatggaaaccgcaagaactggttcaaaatgactattccttat
gggaaaaaatatgacaaagattggcttctgacttcacttcagaatgtctgttccatgcca
ttccatgcagttcaatatcacactgacggcaacaaagctcagttttacgttgaagattcc
acaactgcaaatgcgttggttaaggtgtcacggaaaataacagacaaagatggatataag
gtgactgttattatgaacggctgcccacctccaactttgatccacagtgatctgaagccc
gaggacctggaacatttgaagcaatgcatggccaagcgtttcgatgggtctcagcaggcg
cttgatctgaacaacataagaattgatccagatctggtttctcagaatattgaggtcaca
ttgaacaggaggaactccatgctgggggcgatcaaaattatagaagaaaacattcctgag
ctggtttgcctgaacttgagtaacaacaggttattcaggctagatgacttggctgaaatt
gtgaacaaagtaccgaacttaaagatacttaatctctcacacaatgagctgaagacagag
cgagaacttgataaacttaaggggctgaagttggtggatctttcgttggaggggaatccc
atgtgcaaccacttcaaggaccaggtggactatgtcagtgccattcgggaacgattcccc
aagctgctcaaactggatggacatgatcttccacctcccattggctttgacttagaagtt
gctcctgcgactctaccgccctgcaagcccagttacttcagctcagatgaaatcaagagc
atcatcctttgcttcctgcaacagtattacagcatatacgactcaggcgacagacagccc
ctactggatgcctaccacgacggggcaactttttcgctcagcattcccttctcattgcag
aaccctgcaaaaagcagtttaggagagtatcagaaagatagccgtaacatcaagcgcctg
aaagacccctccatgcgatttcgtttgctgaagcacactcggttaaatgtggttgctttc
ctgaatgaattgcccaaaacccagcatgacattgcttcatttaatgtggatgtcaacact
tacacagctacactacttgcatttacagtgactggagttttcaaagaagtggaaggcaaa
tctcgagactcctaccgatctttctctcgagtgttcattgctgtgcctgctggaaataca
ggtttgtgcatcgtgaatgacgagctgtttgttcgaaacgccacaactgaggaaattcgt
cgtgcgtttgttgctccggctcccacgccatccagcagccctgtgcctacactgtctgcc
ccccaacaggaaatgcttgctgccttttcactaaagtctggcatgaatctggaatggtct
cagaaatgcttacaggacaacgattgggattttgagagagctggtcagattttcactggt
cttaaggctcaagggaagatcccagatgttgcttttgtaaaatga
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