Paramisgurnus dabryanus (large-scale loach): 135778204
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Entry
135778204 CDS
T10799
Symbol
ubr1
Name
(RefSeq) E3 ubiquitin-protein ligase UBR1
KO
K10625
E3 ubiquitin-protein ligase UBR1 [EC:
2.3.2.27
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pdab04121
]
135778204 (ubr1)
Enzymes [BR:
pdab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135778204 (ubr1)
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
UBR box proteins
135778204 (ubr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRT6_C
UBR1-like_wing
zf-UBR
ClpS
zf-RING_5
DUF3112
Motif
Other DBs
NCBI-GeneID:
135778204
NCBI-ProteinID:
XP_065144747
LinkDB
All DBs
Position
17:21845957..21882422
Genome browser
AA seq
1741 aa
AA seq
DB search
MAVSQNGVLLSTKWWEASNRGAAILSYLGEKVPLLYCLETEQQDEEQKVEEHLLYPLECF
LFGEDPHVGLEKLQQCDSGSSSQQCGRVFKEGETVYSCRDCAIDPTCVLCMECFQKSVHK
SHRYKMHASAGGGFCDCGDLEAWKTGPYCSQHDPGTSVPMETDECTLDSGLQERAQTLFQ
TLLHYIADLLVWKENDELSEELKPTVKEDTYFCVLYNDEHHSYDHVIYTLQRAIGCDPNE
AQIYTTLIDKEGRKAVKRGILRSCQQAKDSIRRNSEHITQQPLRVEILHTAVMAHQTFAL
RLGTWFQKIFGYSVGFRQLFCQVALEPGVDNDKLCLISRVMLHDAKLYKGARKVVHELIF
SSLLMDTEYKRQFAMKFTEHYKQLQEDFISDDHQRHISVTALSVQIFTVPTLARQLIEAG
SVIKVIIDTVMEMMREHMDSNNRFHFQGYNSDKFFRVQVIFHDLRYILISKPSAWTEELR
VKFLEGFSVFLGFLRCMQGMEEVKRQFGQHVEVEPEWEAGFTLQMQLRHILSMFQDWCSS
DERVLLLAFQECYQVLMSCTNQPFRREPTDSYMCKQILHARPYKVSQEPVSIHLPVSRLL
AGLYVLLCKTGAVQYLPDFVDPAQLNFIEMTEQSLRCVVLAAQVCADMWRRNGLSLVSQV
YYYQDVKCRTEMFDKDILMLQIAASKMDPDHFLMFILLRFELFDIFNGNCPSKDQEVLKQ
WNSLTEEMLYLIIIIVGERYIPGISDVTKEDVTMREVIHLLCVEPMAHSSLAKSLPENES
NETGLESVIAKVATFKKPGVSGHGLYELKNEWLKEFNPFFYHYSKPQHSKAEEAQKKRRT
QEGMDKALRPPVPPPFCPAFANIVRLLRCDVFIHILRRVLQKAVEDRSNRWTEQMIQRAL
HLVAQALLEEKAQLQSGSAKDVTFDFSLKAQKIGSEHGKSLFHFLTKMKSLPSLEAQKDM
ITWNLQMFEVVKSIREKSGPVASSPVDQSKPEELLGFHTSVQEKEKAERKRKAEAAKAHR
QKIMAQMSAMQKNFIESNKMLYDNVPESSSQNETAASIESIGIDMDDSRVAVGPQQGVCS
TDWEAMTCILCQEEQEVKAQAPAMVLTACVQRSTVLTQCRGKTLSAKEQYYPLFMSPDLA
VGTHTGSCGHVMHATCWQKYFEAVQNTTRNRLHTELLIDLENGEYMCPLCKSLCNTVIPL
IPVEPSKLNYESAELVGQHLTLSRWIHVVLSRIRGLRASREAGSNKEQGAEQATVLFEEG
QADFRSILSFGVQEPPKFSSSIIEMLGVCAVTVHRVGLQSAPNDLCPYVPVMSWNTCAYT
IQAIESMLQDEGKALFGSLQNRQLAGLKAVVQFSSAQSLKNRQTVVQQHFADMLAVLLPV
SNVEDTPSILELDFFHLLVGLVLSIPVLYQEEAVDLQPSAISTAYNHLHLLHLVTMGHML
QVLLTSQDCAVIRGAEEGDEARAAAEIYSVVSQHTDGLRSGVSGSTVAERVKRGILPFLR
CAALFFSCLTGVPPPEELFSIAESPESQLLLICSYLALPCNLFQLFQDHRDVITPLIKRW
CENPAISRALKGEMHIIRYPWKINRLIDLPEDYSVLLNQASHFKCPNSSDDERKHPTLCL
LCGVMLCAQSPCCQVQLNGEDVGACTAHADTCGAGVGIFLRVRECEIVLMASKTRGCRYP
APYLDDYGETDPELVRGNPLHLSPERYRKLLNMWQQHCILEEIARSLEVLNIMFAFEWQM
L
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtcgcagaacggtgtacttctgagcacgaaatggtgggaggcatcaaacaga
ggtgctgcaatactcagctatttgggtgagaaggtcccccttctttactgcctggagaca
gagcaacaagatgaggagcaaaaggtggaggaacacctcctttatcctctcgagtgcttt
ctttttggggaggacccccacgttggactggaaaagctccagcagtgcgacagcggctca
tcttctcagcagtgtgggcgtgtctttaaagagggcgagacagtctactcctgcagagac
tgtgcaatagatcctacatgtgtcctctgcatggaatgcttccagaaaagtgtgcacaaa
agtcatcgctacaagatgcatgcctcagcaggaggaggattctgcgactgcggagacttg
gaggcttggaagaccggaccgtactgctcccaacatgatcctggcacttcagttccgatg
gaaacggatgagtgtacgttggattcaggccttcaggaacgtgctcagacgctgttccag
acactgctgcattacattgcagatcttctggtttggaaggagaatgatgaactatcagag
gagctgaagccaacagtcaaagaagacacctacttttgtgtgctctacaatgatgagcat
cactcatatgaccatgtcatttacacacttcagcgagctattggctgtgacccaaatgag
gctcaaatatacacaactctcattgacaaagagggacggaaagcagtaaaaagaggcatt
ctgagatcctgtcagcaagcaaaagacagtattaggcgtaactcagagcacattacccag
caaccgttgcgggtggagatccttcacactgctgtgatggctcaccagacctttgccctc
agacttggcacatggttccaaaaaatctttggatactcagttggctttagacagttgttt
tgccaggtggctttagagccaggcgtagacaacgataagctctgcctgatcagtcgagtc
atgctacatgatgccaaactttataaaggtgcccgcaaggtcgtccatgagttaattttc
agtagcttactaatggacacagaatacaagagacagtttgccatgaaattcacagagcac
tataaacagcttcaagaggactttatcagtgatgaccaccaaaggcatatttcagtaaca
gctttatctgtacagatcttcactgttcccactttggccaggcagttgatcgaggcgggc
agcgttataaaggtgatcatagacacagtaatggaaatgatgagggaacacatggacagc
aacaatcgcttccactttcagggctataactccgacaagttcttccgggttcaagttatc
ttccatgaccttaggtacattctcatcagtaaaccgtcagcatggactgaggaactaaga
gtgaagtttcttgaaggattcagtgtctttcttggtttcctccgttgtatgcaggggatg
gaggaggtgaagaggcagtttggtcagcatgtggaggtggagccagagtgggaggcgggg
tttactcttcagatgcagctacgtcacattctctccatgtttcaggactggtgttcttct
gatgagagggtcttgctgttggcctttcaggagtgttatcaggttttaatgtcttgcacc
aaccagcccttccgcagagagccaactgacagctacatgtgcaagcaaatcctccatgca
cggccttacaaagtctcccaggagcctgtctccattcacctgcctgtctctagactgctg
gctggtttatatgtgcttttgtgtaaaaccggagcagttcagtacctccctgactttgtg
gatcctgctcagctaaacttcattgagatgacagaacagtcactgcgctgtgtggtgcta
gcagctcaggtgtgtgctgacatgtggcgtagaaacggcctgtcactcgtcagccaggtg
tattattatcaggatgttaagtgcaggactgaaatgtttgacaaggatattctcatgctg
cagattgctgcttctaaaatggacccggaccactttctcatgttcattcttttgagattt
gaactttttgatatttttaatggtaactgccctagtaaggatcaagaggtgctgaagcag
tggaatagtttaacagaggagatgctttacctgataatcatcattgtaggtgagcggtac
atacctgggatcagtgacgtgactaaagaagatgtcactatgagggaggttattcatctg
ctgtgtgttgaacccatggctcacagcagccttgccaaaagtctgcctgaaaatgaaagt
aatgaaacaggacttgaatccgtcatagctaaggttgccaccttcaagaaacctggagta
tcaggtcatggcttgtatgagctgaagaacgaatggttgaaagagtttaaccccttcttc
tatcattattccaaacctcagcatagtaaggcagaagaggctcagaagaagagaagaacc
caagagggcatggataaagccctacgtcccccagtgccccctcccttttgcccagccttt
gcaaatatagtccgtctgcttcgctgtgatgtcttcatccacattctcagaagagttttg
cagaaagcagtggaggaccgctccaaccgatggaccgaacaaatgatccagagggctctg
caccttgttgctcaggcacttttagaggaaaaggcgcaattgcaatctggcagtgctaaa
gatgtgacctttgattttagtctgaaagcacaaaaaatcggttctgaacatggcaagtct
ttgtttcacttcctaaccaaaatgaagtctttaccatcactcgaagctcaaaaagacatg
atcacgtggaatttacagatgtttgaggtggtgaaaagcattcgggagaaatccgggcct
gtagcttcatctcctgtcgatcagagcaagccggaggagttacttggatttcacactagt
gttcaggaaaaagagaaagcagagcgcaaaaggaaagcagaggctgctaaagcacacagg
caaaagatcatggcgcagatgtctgcaatgcagaagaacttcatagagtccaacaagatg
ctttatgacaatgtgcctgagagctcaagtcaaaatgaaacagctgcatctatagaaagc
attggaatagatatggatgacagcagagtagctgtaggacctcagcagggtgtttgctcc
acggactgggaggctatgacctgcattctgtgtcaggaggaacaggaggttaaagctcag
gcacccgccatggtactcacagcatgtgtgcagagatctacagttcttacccagtgccga
ggcaaaacactttctgccaaagaacagtactaccctctatttatgtcccctgatctggct
gtgggcacacatactggtagttgtggacatgtgatgcacgccacctgctggcaaaagtac
tttgaggctgtgcaaaacaccactcgaaatcggctgcacacggagctgcttatagacctt
gagaatggagaatacatgtgtcctctctgcaagtctctctgtaacactgttattcctttg
atccctgtggagcccagcaaactcaactatgaaagtgctgaattagttggtcaacatctg
actctttctcgctggattcatgttgtactttctcggatcagaggcctgagagcttcacga
gaagcaggcagtaacaaagagcagggagcagagcaggccactgtgctttttgaagagggt
caagctgattttagatccattctcagttttggagttcaagaaccgccaaagttctccagc
agcatcatagaaatgttgggggtctgcgcagtgacagtgcacagagtgggtctgcagagc
gcccccaatgatctgtgtccatacgtacccgttatgtcctggaacacttgcgcctacact
atccaagctatcgagagcatgctgcaggatgaggggaaagctctgtttggctccctccag
aacagacagcttgctggactcaaagctgtggtgcagttctcatcagctcagagcctaaag
aaccgtcagactgtagtacagcaacatttcgctgatatgcttgcagtcttgttgcctgtc
tctaatgtagaggacacaccatcaatattagaattggatttctttcatctactggtgggg
cttgttctgtcaatcccagtgttgtatcaggaagaggcagttgacctgcagccgtcagcg
atcagtacagcatacaatcacctccacctgttgcacctggtcactatgggacacatgcta
caggttctgctgacctcacaagattgtgctgtgattagaggagctgaggagggagatgag
gctcgggccgcagcagagatttactctgttgtgtctcaacacactgatgggttgaggtct
ggtgtatctggctctacagttgcagagagagtaaagagaggcatccttcctttcctgcgc
tgtgctgcactgttcttcagttgccttacaggagtgccccctccagaggaactattcagt
attgcagaatctcctgagagtcagttgctactgatctgtagttaccttgccttgccctgc
aacctgtttcaactgtttcaggatcacagggatgttataacacccttaataaagaggtgg
tgtgaaaatccagccatatccagagcacttaaaggtgaaatgcatattatcaggtatcct
tggaaaataaaccggttaatagatcttccagaggactatagtgtgctgctgaaccaagcc
agtcactttaaatgtccaaactcatcagatgatgagcgcaaacacccaactctgtgtctg
ctctgcggggtcatgctgtgcgcacagagtccctgctgtcaggtgcagctgaacggagag
gatgtgggagcttgcacagcccacgctgacacctgcggggctggtgtgggaatatttctc
agggttagagagtgtgagattgttttgatggccagtaagacacgagggtgtcgatatcca
gctccttatcttgatgactatggggaaacagatccagagcttgtgcgtgggaatcctctg
cacctgagtccagagcgttaccgcaagttgctcaatatgtggcagcaacactgcatcctg
gaagaaattgcccgtagcctggaggttctcaacatcatgttcgcctttgagtggcagatg
ctctga
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integrated database retrieval system
