Paramisgurnus dabryanus (large-scale loach): 135779612
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Entry
135779612 CDS
T10799
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135779612 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135779612 (mtrex)
03041 Spliceosome [BR:
pdab03041
]
135779612 (mtrex)
03009 Ribosome biogenesis [BR:
pdab03009
]
135779612 (mtrex)
03016 Transfer RNA biogenesis [BR:
pdab03016
]
135779612 (mtrex)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135779612 (mtrex)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135779612 (mtrex)
Spliceosome [BR:
pdab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135779612 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
135779612 (mtrex)
Ribosome biogenesis [BR:
pdab03009
]
Eukaryotic type
Pre-60S particles
Helicases
135779612 (mtrex)
Transfer RNA biogenesis [BR:
pdab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135779612 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
135779612
NCBI-ProteinID:
XP_065146465
LinkDB
All DBs
Position
10:20764766..20797951
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDDLFSVFDEEQSGSGKKATPKSGTQSGKTPDKSGKKQTGSPAAAVRKRDVDNDG
PDEMVLGKRQKLETVSFEEINLAELMPKVKVEQVETVEGCTHEVALPADEEYTQLKPRVG
KAAKEYPFILDPFQREALLCMDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLLTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDTGGSSGGKWDPKGRK
GGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFN
NAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVLEKM
KKLEEEYNGIQIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPKYCLPFLQPGRLVKVKKE
DLDFGWGVVVNFSKKTNVKATPGDVDPLYVVEVLVHCSKDSVKNAATEAAKPAAHGEKGE
MQVVPVMLHLVTSISSVRLYIPKDLRPYDNRQSMLKCIQEVQKRFPDGVPLLDPIDDMGI
KDPGLKKVIQKVEAFEHRMYTHPLHSDPNLEAIYSLCEKKALIAGDIKTAKRELKKARTV
LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMIFNGLFNDLTAEQA
TALLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSAEAKLDIDEDDYLKQFRPH
LMDVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAM
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggtgatgatttgtttagcgtttttgatgaagagcagtctggttcc
ggtaaaaaagccactccaaagtcgggaactcagtcggggaagacacctgataaatctggt
aaaaagcagacgggttcaccagctgcagctgtccgcaaaagagatgttgacaatgatggt
ccagatgagatggtgctcgggaaaagacaaaagctggaaactgtgtcatttgaggagatc
aatctggcagagctcatgcctaaagtgaaggtggagcaggtggagacagtggagggatgc
acacatgaggtggctttacctgctgatgaagaatacacacagctgaaaccacgggttgga
aaagcagctaaggagtatccgttcatactcgaccccttccagcgtgaggcccttctctgc
atggacaacaaccagtctgtgcttgtgtcggcccatacgtctgccggaaagaccgtgtgt
gcagagtatgccatcgctctggcgcttcgagaaaaacaacgagtgattttcaccagtccc
atcaaagctttgagcaaccagaaatacagagagatgtacgaggagttccaggatgtaggt
ctgctgaccggtgatgtcaccattaaccccacggcttcttgtctggtcatgactactgag
attttaaggagcatgctctacagaggatcagaggtgatgagagaggttgcgtgggtgatc
tttgatgagatccattacatgagagacgcagagcgtggagtggtctgggaggaaaccatc
atcttgctgccagacaatgtgcactacgtctttctgtctgccaccattcccaacgctcga
cagtttgcagagtggatctgtcatcttcacaaacaaccctgtcacgtggtgtacacagac
taccgccccactccactgcagcactacatctttccagcagggggcgatggactacatctt
gtcgtggatgaaaatggggagtttagagaagacaactttaacacagccatgcaagtcctg
agggacgcgggcgacacaggaggtagcagtggggggaaatgggaccccaaaggcagaaaa
ggtggaacaaaaggtccatccaatgtcttcaagattgtaaagatgatcatggagagaaac
ttccagccggtgatcatcttcagcttcagtaagaaggagtgtgaggcttacgccctgcaa
gtggccaaactggattttaacacagatgatgagaaaaagctggtggaggaagttttcaac
aatgccatagactgcctctccgatgaagacaagaagctgcctcaggttgaacatgttttg
ccgttgctgaagaggggaatcggaattcaccatggaggtctgcttcccatcctgaaggaa
actattgagatcctcttctccgagggtctactgaaggcattgtttgctacagaaacattc
gccatggggatcaacatgcctgcccgaaccgttctattcaccagcgcacgtaaatttgac
ggcaaagacttccgctggatcacttctggagaatacatccagatgtcaggtcgtgctgga
agaagaggaatggacgaaaggggaatcgtcatattcatggtggatgagaaaatgagcccc
gctgttggcaaacagttactaaagggttcggctgatcctctgaacagtgcttttcatctc
acctacaacatggtgctgaatcttctgcgtgtggaggagatcaatccagagtacatgctg
gagaaatccttctaccagtttcagcattacagagctgtgcctggggttctggaaaagatg
aaaaagttggaggaggagtacaatggcatacaaatccctaatgaagagagcgtggtgacc
tactacaaaatccgccagcagctggccaaactgggcaaagagatcgaggagtttattcat
aagcctaaatactgcctgcccttcctgcaacctggcagactggtcaaggtgaaaaaagaa
gatttggattttggttggggtgtagtcgtcaatttctcaaagaagaccaatgttaaggct
acccctggtgatgttgacccgttgtatgttgttgaggttcttgtccactgcagcaaggac
agcgtgaagaacgcggccaccgaggcggccaaaccagcagcccatggagaaaagggcgag
atgcaggtcgttcctgtgatgctgcatctcgtcacctccatcagctcagtccgtctctac
atacccaaagacctgagaccctatgacaacagacagagcatgctcaaatgcatacaggag
gtgcagaaacgttttccagacggcgtccctctgctcgatccaatagacgacatgggtatc
aaggatccagggctaaagaaggtcatccagaaagttgaagcgttcgagcacaggatgtac
acacacccccttcacagtgaccctaacctggaggccatctacagcctctgtgagaagaaa
gccctgattgcgggtgacatcaaaacggcgaagcgtgagctaaagaaagctcgtacagta
ctccagatggatgagctgaagtgcaggaagcgtgtgctgagacgtctgggatttgccact
tcctccgatgtcattgagatgaaagggcgcgtggcgtgcgaaatcagcagtgcggatgag
ctgctcttaacagagatgatatttaacggcctcttcaacgacctgacggcagagcaggcc
accgctcttctcagctgcttcgtcttccaggaaaacgccaacgagatgcccaaactaaca
gagcagctggctgcacctctgcgtcagatgcaggaatgcgcaaaacgtatcgctaaggta
tcagcagaagccaagctggacatagatgaagacgattatctgaagcagtttcgtccacac
ctgatggatgtagtctacacctgggccaacggctcctccttctctcaaatatgcaagatg
acggatgtgtttgaaggaagtataatccgctgcatgcgcagattggaagagctcttaagg
cagatgtgccaggcggcaaaggccattggaaacacagaactggagaacaaatttgcaatg
ggtatcacgaagattaagagggatattgtgtttgctgctagtctctacctgtga
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integrated database retrieval system
