Paramisgurnus dabryanus (large-scale loach): 135782725
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Entry
135782725 CDS
T10799
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b
KO
K13126
polyadenylate-binding protein
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135782725 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
135782725 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135782725 (pabpc1b)
03041 Spliceosome [BR:
pdab03041
]
135782725 (pabpc1b)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135782725 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
135782725 (pabpc1b)
Spliceosome [BR:
pdab03041
]
Complex C
Other components
Complex C specific factors
135782725 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
YflT
HTH_58
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
135782725
NCBI-ProteinID:
XP_065149277
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All DBs
Position
19:22315946..22330331
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDVFSKYGAAMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFAPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMTAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQ
RVATQTMGPRPTTAATAAAAPPVRGVPQYKYAPSVRNPQQHMNTQPQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSTGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagttaccccatggcctcgctgtatgtgggtgacctgcaccag
gacgtgactgaagcaatgctgtatgagaagttcagccccgccggtgccatcctctcaatt
cgcgtgtgcagggacatgatcacgcgcagatcgctcggttacgcctatgtcaacttccag
cagccggcagacgctgaacgggctttagacactatgaacttcgacgtgatcaagggcaga
cctgtccgcatcatgtggtctcagcgtgatccctctctgaggaagagcggtgttgggaac
atcttcatcaagaacctggacaagtctatcgataacaaggccctttatgacaccttttct
gctttcggcaacatcttgtcgtgcaaagttgtttgcgatgagaatggctcaaaggggtac
ggctttgtgcactttgagacccaggaggctgcagaaagggccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtaggacgtttcaaatctcgcaaagagagagaa
gctgagcttggtgcaagagccaaagaattcaccaatgtgtatattaaaaactttggagaa
gatatggatgacgacaaactcaaggatgtcttcagcaaatacggtgctgctatgagcatc
cgcgtaatgactgatgagaacggaaaatccagaggcttcggttttgtgagttttgagagg
cacgaagatgcccaaagggctgtggatgagatgaacgggaaagagctgaacgggaagctc
atctatgtgggtcgcgctcagaaaaaggtggagcgccaaacagagctcaagcgcaaattt
gaacagatgaagcaggaccgcatgactcgctaccagggtgtcaatctgtatgtgaagaac
ctggatgatggcatagatgatgagcgccttcgtaaagagtttgctccctttggtacaatc
accagtgccaaggtcatgatggacggcggccgcagtaaaggcttcggttttgtctgtttc
tcttcccctgaagaagccaccaaagcggtgaccgagatgaacggccgcatcgtggccacc
aaaccgctgtatgtggctttggctcagcgtaaagaggaacgacaggctcatctaaccaac
cagtacatgcagaggatggccagcgtccgtgcggtgccaaaccccgtcatcaatccctac
cagcctgctcctccatcaggctacttcatgactgctattccacaagcccagaacagagct
gcatattaccctaccagtcagctcgcccagctcagacccagcccccgctgggccacgcag
ggtgtccgtcctcagcacttccagaacatgccaggcaccatgcgtccctcagctccgaga
cctcagaccttcagcaccatgcgtcctgcctcccaggtgccccgcatgatgtccacacag
cgcgttgctactcagactatgggtccacggcccacgactgctgcgacggcagcagctgca
ccaccagtgcggggcgtacctcagtacaaatatgcccccagcgttcgcaaccctcagcag
cacatgaacacacagcctcaggttacgatgcagcagcctgccgtgcacgtgcaaggacag
gagccgctgaccgcctccatgctcgccgccgctcctccacaggaacaaaagcagatgctg
ggtgaacgtctcttcccgctaatccagaacatgcatcccagcttggctggcaagatcacc
ggcatgcttctggaaatagacaactccgagcttctccacatgctggagtctcctgagtct
ttgcgctccaaggttgatgaggcagtggctgtgcttcaggctcaccaagctaaagaagcc
gctcagaaaaccgtgaccaactctactggtgtgccaagcgtctaa
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