Paramisgurnus dabryanus (large-scale loach): 135782781
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Entry
135782781 CDS
T10799
Symbol
cpsf1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135782781 (cpsf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdab03021
]
135782781 (cpsf1)
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135782781 (cpsf1)
Transcription machinery [BR:
pdab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135782781 (cpsf1)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135782781 (cpsf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
PHTB1_N
Phage_tail_terminator_7
Motif
Other DBs
NCBI-GeneID:
135782781
NCBI-ProteinID:
XP_065149355
LinkDB
All DBs
Position
19:22403624..22428614
Genome browser
AA seq
1448 aa
AA seq
DB search
MYAVYRQAHPPTAVEFAVYCNFISSQEKNLVVAGTSQLYVYRIIYDVESTSKSEKSSDGK
SRKEKLEQVASFSLFGNVMSMASVQLVGNNRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHIPMVRVDPENRCAVMLVYGTCLVVLPFRKDTLTDEQEGIVGEG
QKSSFLPSYIIDVRELDEKLLNIIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNIMQKVHPVIWSLSNLPFDCNQVMAVPKPIGGVVVFAVNSLLYLNQSVPPFGVSL
NSLTNGTTAFPLRSQEEVKITLDCSQAAFITSDKMVISLKGGEIYVLTLITDGMRSVRAF
HFDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLKYTEKLQETPVEEDKENEDQEKQEEP
PNKKKRVDALANWAGKANLPDELDEIEVYGSEAQSGTQLATYSFEVCDSMLNIGPCSSAS
MGEPAFLSEEFQNNPEPDLEVVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCHDMWTVI
YHEEKPEKSPTEGDSEDPEEMKIKPTLEEDKNKHGFLILSREDSTMILQTGQEIMELDTS
GFATQGPTVFAGNIGDNKYIIQVSPMGIRLLEGVTQLHFIPVDLGSPIVHCSVADPYVVI
MTSEGAVTMFALKIDSHTGKSRLTLQKPQIHMLSRVITLCAFRDVSGMFTTENKVNSLFR
EERAVRTQSESETIIQDISNIVDDEEEMLYGESNPLMSPSKDEQSRGTSAMSSTGRDQSG
QNRLEPSHWCLLVRENGVMEIYQLPDWRLVFLVKNFPVGQRVLVDSSASQSATQGDLKKE
EMTRQGEIPLVKEVALVSLGYNHSRPYLLAHVDQELLIYEAFPYDQQQTQSNLKVRFKKM
PHNINFREKKSKLRKDKKPEGQGEESVGVRGRVARFRYFQDISGYSGVFICGPSPHWMLV
TSRGAMRLHPMTIDGPIESFSPFHNINCPKGFLYFNKQGELRISVLPTYLSYDAPWPVRK
IPLRCTVHYVSYHVESKVYAVCTSVKEQCTRIPRMTGEEKEFETIERDERYIHPQQDRFS
IQLISPVSWEAIPNTRIDLEEWEHVTCMKTVALKSQETVSGLKGYVALGTCVMQGEEVTC
RGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCSGYLVSAIGQKIFLWSL
KDNDLTGMAFIDTQLYIHQMHSIKNFILAADVMKSICLLRYQEESKTLSLVSRDAKPLEV
YSVEFMVDNNQLGFLVSDRNKNLLVYMYLPEAKESFGGMRLLRRADFNVGANVNAFWRMP
CRGTLDTASKKSLTWDNKHITWFATLDGGVGLLLPMQEKTYRRLLMLQNALTIMLPHHAG
LNPKAFRMLHYDRRLLQNAVKNILDGELLNKYLYLSTMERSELAKKIGTTPDILLDDLLE
IERVTAHF
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcagtgtaccgtcaggctcatccgcccaccgccgtggagttcgccgtttactgc
aacttcatctccagccaagagaaaaacctggtggttgcaggaacatcacaactttatgtc
tacaggatcatttatgatgtcgagagcacttcaaaatcagaaaagtcatccgatggcaag
agtcgtaaggagaaactggaacaagtggcatctttctctctctttggaaatgttatgtcc
atggccagcgttcagctcgtgggcaacaacagagatgcattgcttctcagcttcaaagat
gctaaactctcagttgtggagtatgatccaggcacgcatgatctgaagactctgtcgttg
cattattttgaagagccagagctgagagatggtttcgttcagaacgtgcacattcctatg
gtgcgagtggatccggagaaccgctgtgctgtgatgcttgtgtacggtacctgcctggtg
gtcttgcctttcaggaaggacacgctcactgacgagcaggagggaatcgtgggggagggg
caaaagtctagtttcctacccagctatatcattgatgttcgtgaactggatgagaaactc
ctgaacattattgatatgaagtttctccacggatactatgagcccacactgctcatcctg
tttgagcccaaccagacgtggccggggcgagtagctgtgcgtcaggacacttgcagtatc
gtggccatctctctgaacatcatgcagaaggttcatccagtcatctggtctctgagtaat
ctgcccttcgactgtaatcaggtcatggctgtgcccaagcccattggtggagttgtcgtg
ttcgctgtgaattctttactgtatttaaatcaaagtgttcctcctttcggggtgtcgctc
aacagtctgaccaatggcacaacagcgtttcccttgaggtcacaggaagaggtgaagatc
accctggactgctctcaagctgccttcatcacgtctgataagatggtcatttctctcaaa
ggaggagaaatttatgtgttgacgctcatcacagacggcatgaggagtgtgcgagcgttt
catttcgataaggccgccgccagtgtcctgaccacctgcatgatgactatggagccagga
tatctgttcctgggctctcgtctgggaaactcgctgctgctcaaatacactgagaaactg
caggagacgccagtggaagaggataaagagaacgaggaccaagagaagcaggaagagccc
ccgaataaaaagaagcgtgtggatgccttggcaaactgggcaggtaaggcgaacctacct
gatgagctagatgagatcgaggtgtatggaagcgaggctcaatcaggcacacaactggct
acatactcgtttgaggtgtgtgacagcatgttgaacattggaccctgttccagtgcctcc
atgggagaaccagccttcctttctgaagagtttcagaataatccagagccagacctggag
gtggtggtgtgttcgggttacggcaagaacggcgctctatctgtactgcagaaaagcatc
aggccgcaggtagtcacaacgtttgaacttcctggatgccatgacatgtggacggttata
taccatgaggaaaaacctgaaaagtccccaacagaaggcgacagtgaagatccagaggaa
atgaaaatcaagcctacgctggaggaagacaagaacaagcacggcttcctcatcctcagc
agagaggactctactatgatcttgcagacaggtcaggagattatggagttggacaccagt
ggtttcgccacacaaggtcccaccgtattcgcaggcaacatcggggacaataaatatatc
atccaggtgtccccgatgggcatcagactgctggagggagtcacccaattgcacttcatc
cccgtggacctgggctctcccatagtgcactgctctgtggctgacccgtatgtggtcatc
atgacgtctgagggagcggtcaccatgttcgctttgaagattgattctcacaccggcaag
agccgactgaccctacagaaaccgcagatccacatgctatcacgtgttattacactatgt
gcgtttcgcgatgtcagcggcatgttcaccaccgagaacaaggtcaactccctgtttaga
gaggaaagggcagtcaggacccaatcagagtcagagaccatcatccaggacatcagtaat
attgtggatgatgaggaggagatgctgtatggtgaatcaaaccctctgatgagccccagt
aaagatgaacagagtcgcgggacttcagcaatgagttcgacaggaagagatcagagtggt
caaaacagactggaaccgtcacactggtgtctgctggtcagagagaacggagtcatggag
atctaccagcttccggactggcgtctagttttccttgtgaaaaatttccccgttggtcag
cgtgttttggtcgacagctctgctagccaatctgctactcagggagacctgaaaaaagag
gaaatgacgaggcaaggagaaatcccattggttaaagaggttgctcttgtatcattaggt
tacaaccacagtcgtccttacctgctggctcacgttgatcaagagcttctgatctacgag
gcttttccatacgaccagcagcaaactcagagtaaccttaaagtgcgctttaagaagatg
cctcataacattaacttcagagagaagaagtccaaactgaggaaggacaagaagcctgaa
ggtcagggagaggagtctgtaggggtcaggggtcgtgtggccagattcagatactttcag
gacatctcaggatattcaggggtgttcatctgtgggccgtctcctcactggatgctggtg
acttctcggggggcaatgcgactgcaccccatgacaatagatggccccattgagtccttc
tcaccttttcacaatatcaactgtcccaaaggtttcctctacttcaacaaacagggtgaa
ctaagaatcagtgtattacccacttacctgtcatacgatgcgccctggcctgttcgcaag
attcctctcaggtgtacggtccactacgtgagctaccatgtggaatccaaggtgtacgca
gtgtgtaccagtgttaaagaacagtgcacacgaatacccagaatgaccggagaggagaaa
gaatttgagaccattgaaagagatgagcgttacattcaccctcagcaggatagattctcc
attcagcttatttctcccgtcagctgggaagccattccaaacacacggatcgacctggag
gagtgggagcatgttacgtgcatgaaaactgtggcgctgaagagtcaggagacggtatca
ggactgaagggatacgtggctctcgggacctgcgtcatgcagggagaggaggtcacctgc
agaggccgcatcttgattctggatgtgatcgaggtagttccagagcccggtcaaccgctc
accaagaataagttcaaagtgctgtatgagaaggagcagaagggacccgtaaccgctctc
tgtcactgcagtggatacctggtgtctgccatcggacagaagatctttctgtggagtctg
aaggataatgatctgacgggtatggccttcatcgacactcagctttacatacatcaaatg
cacagcatcaagaacttcatcctggccgctgatgtcatgaagagcatctgtctgctgcgc
taccaggaggagagcaagacgctgtcactcgtcagcagggatgccaaacccttggaggtt
tacagcgtagagttcatggtggacaataaccagcttggttttctggtttcagacagaaac
aaaaacctgctggtctacatgtacctgccagaagctaaggagagtttcgggggcatgcgc
ctgctccgaagagcagattttaacgtgggcgctaacgtgaacgccttctggaggatgccc
tgccgtggcactctggacacagccagcaagaagtcgctcacctgggataacaaacacatc
acctggtttgctacattggatggaggggtcgggctgcttctgcccatgcaggagaagact
taccgcagacttctgatgttgcaaaatgctcttacgatcatgttgccgcaccatgccgga
ctcaacccgaaagcattcagaatgctgcactatgaccggcggttgctgcagaacgcagtc
aagaatattctagatggagagctcttgaacaagtatctgtacctcagcaccatggagcga
agcgaacttgctaagaagatcggcacaacgccggacattctcttggatgatcttctggag
attgagagagtaactgctcacttctga
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integrated database retrieval system
