Paramisgurnus dabryanus (large-scale loach): 135783103
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Entry
135783103 CDS
T10799
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03022
Basal transcription factors
pdab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135783103 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
135783103 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdab03021
]
135783103 (ercc3)
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135783103 (ercc3)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
135783103 (ercc3)
Transcription machinery [BR:
pdab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135783103 (ercc3)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135783103 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
135783103
NCBI-ProteinID:
XP_065149744
LinkDB
All DBs
Position
7:complement(7112148..7125747)
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AA seq
782 aa
AA seq
DB search
MGKKDKSDRERKSKKRYYNEDEDDDEMMGSDSQEAIPAAAGKQVDESTTKLDEYGAKDYR
LQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPIHVHEYKLTAYS
LYAAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDSVIRDCRLRSAGGEETALITEVISSKSAITKFQQGIGVPSTSQPADGQRSE
TQVPEDIYSYYEQLDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRNDT
VNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRC
LVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSW
EAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLN
FLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKSKKRILLYTMNPNKF
RACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPK
INTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYS
LVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSREEQYQLLQKVLAASD
LDAEEEVVIGEIGGKPQFSRRMGTMSSMSGADDAVYMEYHTSRGSRGSANKNVHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaagataagagtgatcgagagaggaagtccaaaaaacgatattacaatgag
gatgaggatgatgatgagatgatgggcagtgattcgcaggaggccatacctgcagcagct
gggaaacaggtggatgaatccacaactaaacttgatgaatatggagccaaagactacaga
ttacagatgctgctgaagaatgaccactcgtcacggccactatgggtggctcctgatggc
cacatctttctggaagctttctctcctgtatataaatacgctcaggacttcctggttgcc
atagcggaaccagtgtgcagacccatacacgtgcacgagtacaagctgacggcgtattcc
ctgtatgcggccgtgagcgtcggcctgcagacctctgacatcatcgagtatctgcagaaa
ctcagcaagacgtctgtgccagatggcatcgtgcagtttattaagttgtgcacagtaagc
tacggtaaagtcaagttggtcctgaaacacaacaggtactttgtggaaagtgcatttcca
gatgtcattcagaggttgctgcaggactctgtgattcgagactgtcgtcttcgatccgct
ggcggagaagaaaccgctctcatcactgaggtcatctccagcaaatcagcaatcacaaag
tttcagcagggaattggtgttccgtccacctctcagcctgcggatgggcagcgctcggaa
acccaagtgccggaagacatctacagttactatgaacagctggataaagaagaagaagaa
gaggaagagacgcagacagtatcgtttgagattcgtcaggagatgattgaggaacttcaa
aagcgctgcattcagctggaatatcctctcctggcagagtacgacttccgaaatgacacg
gtgaaccctgacatcaacatggacctgaagcccactgcggtcctgagaccctatcaggag
aaaagtctgaggaagatgtttgggaacggcagagctcgatccggagtcattgtgctgcct
tgcggtgctggtaagtctttagtgggcgtcactgcagcgtgcacggtccgtaagcgttgc
ctggtcctggggaactcctctgtgtcagtggaacagtggaaagctcagtttaagatgtgg
tccaccatcgacgactcgcagatatgtcgcttcacttcagatgcaaaggacaagcccatc
ggctgctcggtggctatcagcacatattctatgctgggtcacaccaccaaacgctcgtgg
gaggccgaacgggtcatggagtggatgaaaagtcaggagtggggtctcatcatactggat
gaggtgcataccattccagcaaagatgtttcgtcgcgtgttaactatagtccaggctcac
tgtaaactgggtttgaccgcaacactggttagagaagatgataagattgttgatctgaac
ttccttatcgggccgaagctgtacgaggcaaactggatggagttacagaataacggctac
atcgctaaagtccaatgtgctgaggtctggtgtcccatgtctcccgagttttatcgtgaa
tatgtggccataaagtcaaagaagaggattctgttgtacaccatgaaccccaacaagttt
cgtgcgtgtcagtttctcattcgcttccatgagagaagaaacgacaaaatcatcgttttt
gcagacaacgtcttcgcactgaaagaatacgccatccgcttgaacaaaccgtatatttat
ggacctacatcccaaggagaacgcatgcagattcttcagaactttaaacacaatcccaaa
atcaacaccatcttcatctccaaggtaggagacacttcgttcgaccttcctgaggcaaac
gtcctgattcagatctcctctcacggtggctctcgccgtcaggaagctcaaagactggga
agagtgttacgagccaagaaaggtatggtcgcggaggaatacaacgcttacttctactcg
cttgtttctcaggacacccaagaaatggcttattccacgaagagacagcgctttttggtg
gaccagggatatagttttaaggtgatcacaaagttggctgggatggaagaagaagacctg
atgttctcttctcgtgaggaacagtaccagcttctgcagaaggttctggcagcgtctgat
cttgatgcagaagaggaggtggtgataggagaaattggaggcaaaccacagttttctcgt
cgtatgggaaccatgagctccatgtctggagcagatgatgcggtctacatggaataccat
acgtccagaggtagcagaggttcagccaacaaaaacgtccatcctctgtttaaacgcttc
cgcaagtga
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