KEGG   Paramisgurnus dabryanus (large-scale loach): 135785700
Entry
135785700         CDS       T10799                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    135785700 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdab03021]
    135785700 (taf5l)
   03036 Chromosome and associated proteins [BR:pdab03036]
    135785700 (taf5l)
Transcription machinery [BR:pdab03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     135785700 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     135785700 (taf5l)
Chromosome and associated proteins [BR:pdab03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     135785700 (taf5l)
    STAGA complex
     135785700 (taf5l)
    TFTC complex
     135785700 (taf5l)
    SAGA complex
     135785700 (taf5l)
    SLIK complex
     135785700 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd TFIID_NTD2 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_IFT122_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_RIG_2nd RMC1_N Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_EIPR1 Tricorn_2nd Beta-prop_DCAF4 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_VPS8 Ge1_WD40 PEP5_VPS11_N Beta-prop_IP5PC_F eIF2A WD40_like Beta-prop_ELP1_1st WD_LRWD1 Nbas_N TRIP13_N DBI_PRT
Other DBs
NCBI-GeneID: 135785700
NCBI-ProteinID: XP_065151240
LinkDB
Position
4:22588210..22605406
AA seq 650 aa
MSAPHDLNKRRRRRCEWRETDGVKKRVSPKHILWLKERLSLGLSRTDYAEMKRVRTEQIQ
HAVSQYLKRRQYTDTDGSLKGAKLSQSAEEMAASLTVQTESSCTNVVSAAPCQSDPQQYE
SQFSKLRSFLQDADASCTKEVSGVLFPLFLYLHLNMARCGLKGAVDSFYGRFHSLFQQDP
EQKAIVDLLRGVFSLQDVTSNPKLCSLLDHKYVVHLTDQAYSYLLRYMQSEDNSAICWVL
STHIQVEVTAVRRTDYQLYGAGLGAGNTTSSSATYTAVDGTEGAEPVDVTTGLPQNEAAL
DALQDCIKRVREGPPSLTTVCFYAFQHTDQLLNTAEVSADSRLLAAGFDNSAVKLWSLRA
RKLKAGPHRTDVSKIRLACDLLEEEADDEYTSGSEIKTLRAHSGPVYRTAFLTDGSGLLS
CSEDSTVRFWDLNSFTNTVLYHGHAYPVWDVDVSPCSMYFSTASQDRTARLWSFARTYPL
RLYAGHLSDVDCVKFHPNSNYVATGSTDKTVRLWSTQQGASVRLFTGHRGPVQSLAFSPN
GKYLASAGEDQKLKLWDLASGTLFKDLRGHTDSITSLSFSPDSSLVASASMDNSVRVWDI
RNSHGTALSDGSSSELIGQYTGNTSNILNVQFMACNLLLVTGTALEKQEQ
NT seq 1953 nt   +upstreamnt  +downstreamnt
atgtcagcgcctcatgatctcaataagcgcagaagaagaagatgtgagtggagggagaca
gatggagtgaagaagcgggtttctcctaaacatattttatggctcaaagagcgcctttct
ctcggcctgtcacgtacagattatgcagagatgaagcgcgtccggaccgaacagatccag
catgctgtgtcccagtacctgaaaaggaggcagtacacagacacagatgggtctctgaag
ggagccaaactctcccagtccgctgaggagatggctgctagtctgacagttcagacagag
tccagctgtacaaatgtggtgtccgcagccccctgtcaatcagacccacagcagtacgag
tcccagttctccaaactgcgctcctttctgcaagatgcagacgcatcatgtacaaaggag
gtgagtggggtattatttccactctttctctacctgcacttgaacatggcacgctgtggc
ctgaagggggcggtagactcgttttacggtcgtttccattcgctcttccagcaagaccct
gagcagaaagccatcgtggatttgctgcgaggagtcttctctttgcaggatgtgacctca
aacccaaagctgtgttccctcctggatcataagtatgtggttcacctgacagatcaagct
tacagctacctgctgcgctacatgcagagtgaagataacagcgccatctgctgggtgctc
agcacacatatacaggttgaagttacagcggtgcgccgaacagactaccagctgtatggg
gctgggctcggagcgggaaacacaacctcttcgtctgccacctacactgcggtggatggg
acggagggggcggagcctgtggacgtcaccactgggttacctcaaaatgaggccgcgttg
gatgccttgcaggactgtataaagcgcgtgcgagagggtccgccttcactcaccaccgtc
tgcttctacgcgttccagcacacggaccaactgctcaatacggcggaggtttcggcggac
agccgcctgcttgccgctggctttgataactcggccgtgaaactgtggagtttacgggca
cggaaactgaaggcggggcctcacaggactgatgtgtctaaaatacgactcgcatgtgac
ctgcttgaggaagaggcagacgatgagtacacctcaggcagtgaaattaagaccctgcgt
gctcacagcggtcccgtctaccgcacagccttcctcaccgacggctccggtctgctgtcc
tgttcagaggactccaccgtgcgcttctgggatctgaacagctttaccaacacagtcctg
taccatggccatgcctaccccgtttgggacgtggacgtcagtccctgcagcatgtacttc
tccacggcatctcaagaccgcaccgctcgcctctggagcttcgcccgcacgtacccgctc
cgtctctacgccggccacctctccgatgtcgactgcgtcaaatttcaccccaactctaat
tacgtggcgaccggctccactgacaaaacggtgcgcctgtggagcacgcaacagggggcg
tccgtcaggttgttcaccgggcaccgcgggcccgtgcaatcgctcgccttctcgcccaac
gggaaatacctggcgtcggccggagaggatcagaaactgaaactgtgggacctcgcatcc
ggcacgttgttcaaagaccttaggggtcacacagatagcatcacaagcctttcctttagc
ccggacagtagtctggtggcctccgcgtctatggataattctgtgcgggtgtgggacata
cggaactcgcatggcactgccctgtctgacggctctagcagcgagctgattggacaatac
acgggcaatactagtaatatactgaacgtccagtttatggcctgtaacttgttgctggtg
acgggcactgcgctagagaaacaagaacagtag

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