Paramisgurnus dabryanus (large-scale loach): 135786691
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Entry
135786691 CDS
T10799
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135786691 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135786691 (msh6)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135786691 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
135786691
NCBI-ProteinID:
XP_065152270
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Position
20:7904914..7915639
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AA seq
1372 aa
AA seq
DB search
MAKQSSLFNFFTKSPPLVTKAKSSPSPVEADVPSNKSNTSPKEEAKINKKTTSKPVKDHQ
KTGHAKLFGDKAVSAKQSSSSMFSAGALVWAKMEGHPWWPCMVVPQPLTGQQMRGRGRDQ
RLHVHFFDEPPTRGWVNTKYIRDYQGSDSPDAKSGGVFFSGKPVIRKAMELADLAMKESA
EQRLKMPMCADPSDEEEGDEEDMEVEKSTLSDEEMSEEEVEEKVKPGRRSSRAAAEKGQK
SKRRRIVVASDSEDSGEEFKPDQHAAGSSDEEEEEETVSSGVEEESEPEAEPDSPVKPLK
RKRSEKPAKAKNKPASSNTPKRAPVTSVTPSLGSNTKSRLSAFSAPDNFESQNSGTGGQD
GGSTVWDHEKLDWLQDGKRKDGQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSE
MFDTVLFYKVGKFYELYHMDAVIGVNELALTFMKGSWAHSGFPEIGFGRFSDVLVQKGYK
VARVEQTETPEMMEARCKAMARPTKFDRVVKREVCRIITRGTQTYSVLDGAPSETQSKYL
LSVKEKSEEDSAGHGHIYGVCFVDTSVGHFHVGQFQDDRHCSRLRTMVAHYSPAQVLFEK
GNPSAETLKMFKAILSSALQEGLNAGSQFWDAQKTLKILAEEDYFKESTADNEGGSVLPL
TLKAMTSESDSLSLTPKKGYELALSALGGCMFYLKKCLVDQELLSMGNFEEYIPVDVEME
QAGGASCFFAKTRQRMVLDGVTLANLEILQNSSTGGPEGSLLERLDTCCTPFGKRLLKQW
LCAPLCNPSSIADRLDALEDLMGAPSQATEVTDLLKKLPDLERLLSKIHSMGTPLKGQDH
PDSRAVLYEELIYSKRKIADFLAALEGFKVMKEIVSVMDPIAEDFRAKLLRQVLLLKSED
KEGLFPDLSPELKRWDTAFDHQKARTTGVITPKAGFDPEFDQALSGIKDCEKDLQEYLDK
QKKRLGCKNLSYWGTGRNRYQLEVPDSVSERSLPEEYEVRSTKKGWKRYSTKEIERLFSE
LQSLEDKRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSLSRYSQSGDGPMVRP
EMVLPGDRCQASPFLDLRGSRHPCVTKTFFGDDFIPNDIFIGCPGDNEEEDQDNMKALSP
CVLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPADSLRLTPVDRVFTRLGASDRIMSGES
TFFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTH
YHSLVEDHARDPAVRLGHMACMVENECEDPSQETITFLYKFIGGACPKSYGFNAARLANI
PEEVIQSGHKKAREFERSTVSLRLFKKLCSYAEDATAARDEFNTLVQLICSL
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcaaagttccctgtttaatttcttcacaaagtcaccgccgctcgtgacaaag
gccaaatccagcccgtcaccggtggaagcggacgttccctcaaacaaatccaacacatct
cctaaagaagaggcgaaaattaacaagaaaaccacatcaaaaccagtcaaagatcaccag
aagaccggccatgcgaaactttttggagataaagcggtttctgcaaagcagagttcctca
tctatgtttagtgctggtgctcttgtatgggctaagatggagggtcatccctggtggccc
tgtatggttgtgcctcagcctctgaccggacagcagatgagaggtcgtggccgagaccaa
agacttcacgtgcacttctttgacgaaccaccgacacgtggttgggttaacacaaagtac
ataagggactatcaaggttctgatagcccagatgccaaatcaggtggtgttttctttagt
ggtaaacctgttattcgtaaagcgatggagctggcagaccttgcaatgaaagagagtgca
gagcagagactgaagatgccaatgtgtgcggatccctcggatgaagaagagggagatgaa
gaggatatggaggttgagaaatcaaccttatcagatgaggaaatgtctgaagaagaggtt
gaggaaaaggtaaagcctggtcgtcgttcatctcgtgctgcagccgaaaaaggtcagaag
tccaagcgtcgacgcattgtggtggcgtctgacagcgaggactccggtgaagagtttaaa
cctgatcagcacgcagcaggtagcagtgatgaggaggaagaggaggagactgtgagcagt
ggggttgaggaagagagcgaacccgaggcagaaccagacagccctgtgaaaccattgaaa
cgcaaacgctctgaaaagccagctaaagcaaagaacaaacctgcctcctcaaatacccct
aaacgggcaccagtaacatctgtaactccatctttgggatctaacaccaagtcacgccta
tctgctttctctgccccggacaactttgagagtcagaacagtggtaccggcggacaggat
ggagggtccaccgtgtgggaccacgagaaactcgactggcttcaggatggcaaaagaaaa
gatggccagcgaaaacgtcagtctgacgaaaactacgaccccacgactctatacgtaccc
gaggattttttgaacaggacaacacctggaatgcgccgctggtggcagctgaagagtgaa
atgtttgatacggttctgttttataaggttggcaagttctacgagctctaccacatggat
gccgttattggcgtgaatgaattggctctaaccttcatgaagggcagttgggcccattct
ggcttccctgagattggctttggacgtttctctgatgttctggtacagaaaggctacaaa
gtggctcgtgtggaacaaaccgagacacctgagatgatggaagcgagatgtaaggccatg
gcacgtcccaccaagtttgaccgtgttgtcaagcgagaggtttgtcgaatcatcacgcga
ggcacccagacctacagcgtgcttgacggtgccccttctgaaacgcaaagcaagtatctg
ctcagcgttaaagagaagagtgaagaagacagcgcaggtcatggccacatctacggggtc
tgcttcgtcgacacttctgtaggacacttccacgtcggacagtttcaagatgaccgacac
tgttcccgtctgcgtaccatggtggcacactactctcccgcccaggttctgtttgagaag
ggcaacccatcagctgagacgcttaaaatgtttaaggccatcttgtcatctgctctacag
gaaggactgaatgctggttcacagttttgggatgcccagaagactctcaagattcttgca
gaggaagactacttcaaagaaagcacagctgacaacgaaggaggatcggttctccctttg
acccttaaagctatgacgtctgaaagtgactctctgagtctcactccaaagaaggggtat
gaactagctctttctgcacttgggggctgcatgttctaccttaagaaatgtcttgtagac
caagagcttctttctatgggcaactttgaggagtatattcctgtggatgttgagatggag
caagcaggtggagcgtcatgtttttttgcaaagactcgccaaaggatggtcctggatgga
gtgacccttgccaatcttgagatccttcagaatagctcgaccgggggtccggagggatcc
ctgcttgaacggttggatacctgctgcactccttttggaaaaagactcctcaagcaatgg
ctctgcgcccctctttgtaatccatcctctattgcagatcgtttagatgcgctggaggat
ctgatgggtgctccatcccaagctactgaagtcacagacctactgaagaagcttccagat
cttgagagactactgagtaaaatccacagcatgggaactcctttgaaaggacaggaccat
ccagactcccgagccgttctgtacgaagagctcatctacagcaaacgaaagatagcagac
tttctcgcagcgctcgagggcttcaaagtcatgaaagaaattgtgtcagtcatggaccct
attgctgaagacttccgggctaagctgttgcggcaggtgttgcttttaaaatcagaagac
aaagaggggctttttcccgacctttcaccagagctcaaacgttgggacacggctttcgac
catcagaaagctcggaccactggtgtgataaccccaaaggccggcttcgacccagagttt
gaccaggctcttagtggaataaaagactgtgagaaagacctgcaagaatacctggacaaa
cagaagaagagattgggttgcaaaaacttgtcttattggggaacaggaaggaaccgttac
cagttagaagttcctgatagtgtttccgaaagaagcttgccggaggagtacgaggtgaga
tccactaagaagggttggaagcgatactcgaccaaagagattgagcgtctgttttcagag
ctgcagagcttggaagacaaaagagatgctgcacttaaggactgcatgagaagactcttc
tacaattttgacaagaattacaaagactggcaaaccgctgtggagtgcatggctgttctt
gatgtgttgttgagcttatcccggtacagtcagagcggtgatgggccaatggtgagaccc
gagatggttcttccaggggacaggtgtcaggcttcacccttcttggatctaagaggttct
cgtcatccatgtgtcaccaagaccttctttggcgacgacttcatccccaatgacatcttc
atcggttgccctggtgataatgaagaagaggatcaagataacatgaaagcactttcccca
tgtgttctagtcactgggccaaacatgggaggcaaatccacactaatgagacagtgcggt
ctggtggtgattttggctcagttgggctgttatgtgcctgctgacagtttgcgtctcact
cctgtggaccgagttttcactcggcttggtgcctctgatcgcatcatgtcgggtgagagt
actttctttgtggagctcagtgagacggccagcattttgctgcacgcaaccaaccactct
ctcgtcctcctcgatgaactgggcagaggtacggccacatatgacggtacagccatcgcc
agcgcagtggtgaaggagctatcggagaagatctgttgccgtactctgttctccacacat
tatcactcactggtggaggatcatgctcgggatcctgcagtcaggcttggacacatggcc
tgcatggtggagaatgaatgcgaggaccccagtcaggagaccatcaccttcctgtacaag
ttcatcggtggcgcttgtcccaaaagttacgggttcaacgcagctcgcttggctaatatt
ccagaggaggtcatccagtccggacataaaaaggcccgggagttcgagaggagcacggtg
tctctcaggttatttaagaaattgtgttcatacgctgaagatgccaccgccgctcgtgac
gagttcaacacattagttcaactgatctgcagtttgtag
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