Paramisgurnus dabryanus (large-scale loach): 135787049
Help
Entry
135787049 CDS
T10799
Symbol
col17a1b
Name
(RefSeq) uncharacterized protein col17a1b
KO
K07603
collagen type XVII alpha
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135787049 (col17a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135787049
NCBI-ProteinID:
XP_065152827
LinkDB
All DBs
Position
20:complement(17636317..17667161)
Genome browser
AA seq
1599 aa
AA seq
DB search
MDDLKQHRNYSGGSLGDKGIHETITTTRLASLPPRGFTASSNKGMSSNTGASSLDRNILT
QSNGSSYFFSSSGGAGGFGSGSTEFLTEETTVSLGRKSGGGSAEGFESVFGLDSGLRVRS
SSTDGTRRTQDSCIAPLLLEKKTITLHSSHYDGSSSENSSPETKRKHYGPSRGRTSSRET
EIRRRLQSASPSTRWTELEDVKKLLKGSRSCSVSPTRSPCSSPLPIPRKATIETKISTKP
VEQYDNVDLDTDLTSITWNTSTLPAGISTSTSAYSFHSNTNNMATGASLPSSTSPSSLSA
YGFHNNLAPVSGGLSSGANTLPGYGVHNKYSASSNSTSALGTGVSSSGYGVQKNYSTSSN
IPAAVSTGVSTSGYGVQKNYSSSPKSTAALGTGVSTSGYGVQKNYSTISNCTAAVSTGVS
TSGTGTRLLNENVTKKYLISEKENIPVKRDCEDLILTKDSGKQFTNSAHNAKAESYSDVS
VKKEALTTSYSESPLVKSSSGAYYGSPLVATKDKATYAEIKDEDECGGGCCGCGPHCCSW
WKWLLGLLLALLLLLGLLFGLLAVADQLKKLKTRVTTLEGIVSNPRTERLFASINDVNSS
GGEKSVYDASVYSGIHFRETLRAELQSEAMKGYLATLVNSERGLPGPKGEIGPPGPKGDT
GFPGQSGLPGRDGSKGEKGNAGQHGAEGSPGFRGRDGQPGPRGEPGPPGTGEKGDRGFPG
ALGPAGPPGPKGATGLHGEQGPQGFRGELGPKGDRGLPGSKGDRGEKGDNGFPGIPGSPG
RSGSAGEKGDKGSSGPQGATGEKGQRGESGSIGLPGIRGAAGPPGDAGIPGTPGIQGPPG
IPGNPGQPGTKGETGEPGRVINAAGSSSVAIPGPPGSPGPPGPQGAPGLSGPIGPAGLPG
QPGPKGPKGDQGDRGEPGIVVRTSETLSSRHTGSVYGAQNAGVTGPAGPPGPPGPPGPPG
NSIQGPPGPPGLPGYGQPGPKGDRGDSGTLVPNSGTFFSGPPGPPGPQGPKGATGAQGPR
GYQGEPGQPGLPGSSGRVITEYGTGQGPPGPPGSPGLPGRDGQKGDPGTPGRTIYQTDSR
GSVAAGPPGQPGPPGPPGPPGTPGHSSGSHSVADYRHYIREYMQSDSMRQHLSSIQGPPG
PPGPSASVEDVASRVIAYLRRSGTSGVSFSQGPQGPPGPPGPSGSISAEYIISLLQRDDV
RRYVIGPPGPPGAPGSVTSTFNTQEVANYVLRVMNDKGMINRPGPPGPPGPPGQPGSTYS
DIVTLIQKAGLSGSTGRPGLPGPPGIQGPPGPPGIPGSSTSVVSGYKLEDIQRYLHNSGF
RGPPGPPGPQGPQGPPGDSFVSSSGSSSSGSSSSRSSSSGSSSSGSSYSGSSQAQRDLIR
SELQDYFNSDTVKLYTYGLPGPPGPQGEKGERGEPGYSHQTVRSQYHYGTQTGEPLDYSN
VAVKVTDYIKNQGLLQDMTETYWRSQVGRLQGAPGPAGPPGPPGYSRVFAAYGNVTADLV
DFFRIHGTIPGPPGRQGPRGERGYPGSKGEKGEIGSSGIAGLPGQRGPEGPRGEKGEKGE
IGIPGKPGLLGQRGPEGPRGEKGEKGDIQTGRWRRATGV
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttaaaacagcatagaaactattcaggaggaagtttaggagacaaaggcata
catgaaacaattacaacaactagacttgcgtctctacccccacgaggcttcactgcgtcc
tccaacaagggtatgtcaagtaacactggagcttctagcctggataggaacattttaacc
caaagcaacggcagttcttatttcttttcttcatctgggggtgcgggcgggttcggatct
ggttccactgaatttctgacagaggagaccactgtgagcttaggcaggaagtcaggtggt
ggttctgctgaaggttttgagagtgtctttggattggactcagggctaagggtgagatcc
agctctactgatggcacgaggagaacacaagactcctgcattgcccctttgttgctggaa
aagaaaaccataacccttcactccagtcattatgatggaagctcaagtgagaattcatcc
ccagagaccaaaagaaaacactatggaccaagtagaggaagaacttcgagcagagagaca
gaaatcaggagaagactacagagtgcatctccttctacaagatggacagagctggaggat
gtgaaaaagctgttgaaaggttcacgctcctgcagcgtgagcccaacaagatctccctgc
tcctctcctctgcccattcctcgcaaagccaccatagaaaccaagatctccaccaaacca
gttgagcaatatgataacgttgatctggacactgatctgacctcaattacctggaacacc
tctacactgccggctggaatctccaccagtacttcagcctacagctttcacagcaacacc
aacaacatggcaacaggagcttctcttcccagcagcacatctccatcatctttatcagct
tatggatttcataacaatttagctcctgttagtggaggtctttcgagtggagctaacaca
cttccaggatatggagtacataacaaatattcagcaagttcaaacagcacttctgcattg
ggcacaggtgtctccagttcaggatatggagtgcagaaaaattattcaacaagttcaaac
atccccgctgcagtaagcacaggcgtctccacttcaggatatggagtacagaaaaattat
tcatcaagtccaaagagcactgctgccttaggaacaggtgtctccacttcaggatatgga
gtacagaaaaattattcaacaatctcgaactgcactgctgcagtgagcacaggcgtctcc
acttcaggaaccggtacaagactccttaatgagaatgtcacaaagaaatacctgatatca
gagaaagagaacattcctgtaaagagagactgtgaagatcttattttgaccaaagacagc
ggcaagcagtttaccaacagcgcccacaatgccaaagcagagtcatattcagatgtttca
gtgaagaaggaagctttgacaaccagctattctgaaagtcctctggtcaagtctagctct
ggtgcatactacgggtctccattagtggcaacaaaagataaagctacatatgcagagatt
aaggacgaggatgaatgtggaggaggttgctgtggatgtgggccacactgttgctcctgg
tggaagtggctgctgggccttttgctcgccctgctgctgctccttggacttctgtttgga
ctccttgctgtggctgaccagttgaagaaactgaagactcgtgtcaccactcttgaggga
attgtctcgaatccacgcacagaacgtctgtttgcttctattaatgatgttaacagcagt
ggtggagagaaatctgtgtatgatgcttcagtctattcaggcattcattttagggaaaca
ctgagagccgaactgcagtctgaagcaatgaaaggctaccttgcgactttagtcaattct
gaaagaggactgccagggcccaaaggtgaaattggacctccagggcccaaaggagacaca
ggtttcccaggacaatcaggattaccaggaagggatggatcaaaaggggaaaaaggaaat
gcaggtcaacatggtgcagaaggatcaccagggtttaggggaagagatggacaacctgga
ccccgtggagagccagggccaccaggaactggagaaaagggtgacaggggtttccctggt
gcccttggtccagctggtccacctgggccaaaaggtgctactggattacatggtgaacaa
ggccctcaaggcttcagaggtgaacttggtccaaaaggtgacagaggacttcccggaagt
aaaggtgatcgtggtgagaaaggagacaatgggtttccaggtattcctgggagtccaggg
agatccggatcagctggagagaaaggagataaaggatcttcagggcctcaaggagctact
ggtgaaaagggccaaaggggagagtctgggtcaattggattaccaggaatcagaggagcg
gctgggccacccggtgatgctgggataccaggaactcctgggattcaaggccctccaggc
attcctggcaatcctggtcaacctgggactaaaggtgagaccggtgaacctggaagagtg
attaatgcagcaggctcaagctcagtggcaatcccaggaccacccggcagccctggacct
cctggcccacagggagctccaggactctcaggccccattggccctgctggacttcctggt
cagcctggtcctaaaggtcctaagggagatcagggagatcgaggagaacctggtattgta
gtgagaactagtgagactttgagttcaaggcacacaggaagtgtttatggtgctcagaat
gctggtgtcactggaccagctggtcctcctggtccaccagggcctcctggacctccagga
aattctatacaaggaccaccgggaccaccaggcttgcctggatatggacaaccaggccca
aaaggagacagaggagattcaggaacccttgtgcccaattcaggaacatttttttcagga
ccacctgggccacctggacctcaagggcctaaaggagcaacaggtgcccaaggtccaagg
ggataccaaggggaacctggtcagcctggccttccaggaagttcgggtagagttatcact
gaatacggtacgggtcaaggaccacccggtcccccaggatcacctggactacccggacga
gacggccaaaaaggggatcctggaacgccaggtagaacaatataccaaacggactcaaga
gggtcggttgcagccgggcccccagggcagcctggtcctccaggtcctccaggacccccc
ggtactccagggcattccagtggatcgcattctgttgcagattatcgtcattacattagg
gagtatatgcagagtgacagcatgaggcagcatttgtcaagcatacaagggccaccagga
ccacctgggccttcagcgtctgtggaggacgtggcatctcgagttattgcctaccttcgg
cgtagtggaactagtggtgtctcttttagccaaggtccccaaggtccacctggtcctcca
ggcccatcaggaagtatatccgctgaatacatcatttctcttttacagagagatgatgta
aggcgttatgtaattggccctccagggccacctggagcgcctggcagtgttactagtacc
ttcaacacgcaggaagtggcaaattatgtcctcagggtgatgaatgacaaggggatgata
aatagacctggaccaccaggccctcccggccctccaggccaaccaggctccacctacagt
gacatagtcactctgattcagaaggcagggcttagtggaagcactggacgtccaggcctt
cctggtcctccagggatacagggacctcctggtccacccggtatcccgggaagcagcact
tctgtggtctcgggttacaaactggaggacatccagagatacctgcacaattctggtttt
agaggacctcctggccctcctggtccacaaggaccccaaggacctccaggagactccttt
gtgtcatctagcggatcttcatctagtggatcttcatctagcagatcttcatctagcgga
tcttcatctagcggatcttcatatagtggatcttcccaggcccagcgagacctaatccgt
tctgagctgcaggactactttaacagtgacactgtaaaactctacacttatggcctccct
ggacctcccggacctcaaggagaaaaaggtgaacgtggtgagccaggatatagtcatcag
actgtcagaagccagtaccactatggtactcagaccggtgaaccactggactactccaat
gttgcagtgaaagtgactgactacattaagaatcagggtctactgcaggatatgactgag
acgtactggagaagtcaagtaggaagactccaaggagcccctggacctgctggtcctcct
ggtccgcccggatatagccgcgtgtttgccgcctatggaaacgtgactgctgaccttgtg
gacttctttagaatacacgggactattccagggccacccggtaggcaggggccaagagga
gaaagaggatacccaggatctaaaggagagaaaggggagataggaagttcaggaatagct
ggcctgcccggacagagaggacctgaaggaccaagaggagagaagggtgaaaaaggggag
attggaattcccggaaaacctggcctgctagggcagagaggacccgaaggaccaagagga
gaaaagggtgaaaaaggtgatatccagactggtagatggagaagagccacgggtgtgtaa
DBGET
integrated database retrieval system
