Paramisgurnus dabryanus (large-scale loach): 135788882
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Entry
135788882 CDS
T10799
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135788882 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135788882 (cnot3a)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135788882 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135788882 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
135788882
NCBI-ProteinID:
XP_065154401
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Position
13:14089402..14098053
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AA seq
900 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVDSIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEEIPTTLMA
TSPQGHNEDEMFLQSSSTPTSTTSSSPIPPSPATGITEISEDKRARSIDGEVSQSPVKNG
NPSLSSFSSSASSGSSSSSSSLVSMATVVGSCTAVSGPSSLPGSFSNAVLQHPPQSQQQA
QVKLSSTSSTTSNNTPSPPSHPTLPISTSSSMPSPSTPGPVTSNSQSSSAGLGGSSHGLG
MGLGKGGVTVTSSSSVGQMQGLGMTGMPSSLSTMAGLLSGSTPAPYAQAAASGTASSASS
GPVGNSSSSTGMSITSGSTGGVSTGATSNGTGTGVGLGLLGSSSGHGALSAGILNLIPGQ
TSLQGSAQVPISPVGTAPGGGIGEGGLGGNGSSAVGSGGVGTNVAPARPPSGLKQNGATS
YSAVVADNTTETSLSSASQSQNSHSSSSSSSSNQNLDNGPSLLSSITLPPSSPSPAFTDS
TPGGGSLLNGPHSYTPNTEAIKAPEPPSSLKAMAERAALGLTLDGEIPSLHLTDRDLFSG
SSAPPGPTTAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQESAWTHMPHPSDSER
IRQYLMRNPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKK
QSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaacttcaaggagaaatagatcgatgtttgaaaaaagtcgctgaa
ggagtagaacagtttgaagacatttggaaaaagcttcacaatgcagcaaatgccaatcag
aaagaaaagtatgaggcagatctcaagaaagagattaaaaagctccagcggctacgagac
cagattaaaacatgggtggcatccaatgagatcaaagacaaacggcagctagtggaaaac
cgcaagcttattgaaacgcaaatggagcgattcaaggtggttgaaagagaaaccaagaca
aaggcctattcgaaagaggggctgggattggctcagaaagtggacccggcacagaaagag
aaggaagaaacggaacagtggctcacgaatacaatagacactttgaacatgcaggtggac
cagtttgaaagtgaagtcgaatccctctctgttcaaactcgaaagaaaaaaggagacaaa
gagaagcaggatcggattgaggagctgaagaggttaatcgaaaggcacaggtaccacatt
agaatgctggagaccatcttgaggatgttggacaatgattcgattcaggtggactctatt
cataaaatcaaagatgatgttgagtactacattgattcttcacaagacccagactttgag
gagaacgagtttctctacgatgacttggacttggaggagataccaacaaccttgatggca
acgtctcctcagggccataatgaagatgagatgttccttcagtccagcagcaccccaacc
tcaaccacctcatcttctcccatccctccatctcctgctacaggcatcacggaaatttcg
gaagataaaagagctcgatcgatagacggtgaagtgagtcagtctcctgtgaagaacggc
aacccatctctatcatccttctcctcatccgcctcctcaggctcctcctcctcttcttct
tctctggtctccatggctactgttgtcgggagctgcacagcggtctctgggcccagcagc
ctaccgggaagctttagcaatgcagtactgcagcatccacctcagtcccaacagcaagca
caggtcaaactctcctcgacatcatctacaacctccaacaacacgcctagcccacccagc
caccccacactacccatatccacttcttcctccatgcccagtcccagcacacctgggccg
gttacttccaactcccagtcgtcttcagcagggcttgggggctccagtcatggactgggg
atgggtttggggaaaggaggtgtcacagtgaccagcagcagtagtgtgggtcaaatgcaa
ggtttgggcatgaccggaatgcctagttctctcagtaccatggcagggcttctctcaggc
tctacccctgccccctatgcccaggcggctgcaagtggaacagcaagtagtgcctccagt
ggtccagtggggaatagcagcagtagcactggcatgtcaataacaagcggaagcacagga
ggagtgagcacaggtgcaacaagtaacggtacgggtacgggggtaggtttgggcctgtta
gggtccagttctggccatggtgctttaagcgcaggaattctgaaccttataccagggcag
acatctcttcaggggtctgcgcaagtaccaataagccctgtgggcacagcacctggggga
ggaatcggcgagggtggattgggtggaaatgggagcagtgcggtgggaagtggaggagtg
gggacgaacgtagcacctgcacgaccccccagcggcctcaaacaaaatggagcaaccagt
tacagtgctgtggttgcagacaacacaacagagacctccctcagcagtgccagccaatca
caaaacagccattcctcctcctcaagctcgtcatcaaatcaaaatctggataatggcccc
agtttattgagttcaatcactctacccccctcctccccatcacctgctttcactgacagc
acacctggtggtgggagtctgctaaatggcccacactcctacacacccaacacagaagcc
atcaaggcacctgaaccaccaagctccctgaaagcgatggcagaaagagcagcactagga
ttgacactagatggagaaatcccctcattacacttgacagatcgagatctgttctcaggg
tcttcagccccacctggtcccacaacagcacctcagcctgctgtttcagaagtcaacctc
ccaccatctttaggggcatgtccattaggacccacccccttaacaaaagagcagctctac
caacaggccatgcaggagtcggcatggacacacatgccccacccatctgattcagagaga
atcaggcaatacctgatgaggaatccttgccctacacccccattccaccaccaggtgccc
ccacatcattcggactctatcgagttctaccagagattgtccactgaaactctcttcttc
attttctactaccttgagggcacaaaggcacagtacctgtcagctaaagcactgaagaag
caatcgtggaggttccacacaaagtacatgatgtggttccagaggcatgaggaacccaaa
accatcactgatgagtttgaacagggcacgtacatttactttgactatgaaaagtggggc
cagagaaaaaaggaaggatttactttcgagtacagatacttggaggacagagatctacag
tga
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