Paramisgurnus dabryanus (large-scale loach): 135789147
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Entry
135789147 CDS
T10799
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135789147 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135789147 (smg5)
03032 DNA replication proteins [BR:
pdab03032
]
135789147 (smg5)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135789147 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
135789147 (smg5)
DNA replication proteins [BR:
pdab03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
135789147 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
135789147
NCBI-ProteinID:
XP_065154889
LinkDB
All DBs
Position
13:complement(5651236..5680015)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSGPGQDSEPEAKVLHIKRLYRAVVETVHKLDVIISSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSASPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVETEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFDGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPHPTHGSQSTGEEEEEHDSICSVLPDSLIFKMVVTC
LMVVHRLKRGASKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESDVTALRTDNTDEPE
ARDSSEAPSEDRTLQNGSLEEDEEKENDEEEPTGNGRTAEVKKALEKKRSAEEKQKQKRK
FSRLSMLRRRRCAHKEDESDLSEGFESDEEEDEEDAVPVDGLGSSRVQMNSLAREGRKEP
LAVDGRWESGSEEEEGGTAFDVETDSDMNSQESRSDLEDIEDAENAPQHQQPEEDEQPQP
SREENSTPPATNGPLVTNDASISSNLQAMSSQLFQSKRCFRLAPTFSNVLLRPPATTNPT
SDSNPKHSKETTPLPEKTSSNMSPEIVNGTNDNDADSDSEGSVHSNQSIPSEKTLSERLE
ILTNQDLIQIVKVFLDWLRTNTDIILMCAQSSQSLWNRLSVLLNLLPEGTKILEADLGLN
KEVAELLNESERPGLVQTLLLPEDLALRHLPALSSAHRRLDFTSQRPSLSPLEECVVRLG
CIRSFGHFLTNLQGNVLHFNPEAGIFTSISQSEQENLIQQAKAQFRMAEEEARRNRLMRD
MAQLRLQLEVSQLEGSLQQPKAQSSMSPYLVPDTSALCQHLGPLRQLAASGCFIIIIPRT
VIDGLDMLKKENAGARDSIRFLETEFRKGNRYIRCQKESGRSFERDKLKRQDTEAWHLYK
MVDSCRQLTGSQKSGDEDTAGMVTILTGHSLEEMTERSASMKAAVQAVGSAGMELKNITE
FYQQWKEMG
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaggacagcgagcctgaggccaaagtgcttcatattaaacgtctg
tacagagctgtggtggaaacggtgcataagttggatgttataatcagcagcaagtcttcc
tatagggaggtcttcaaacctgagaacatcagcttgaggaacaaattgcgggaactttgt
gtcaagctgatgtttctgcatccggtggactatggacgcaaggctgaagaactgctgtgg
agaaaggtctactatgaggtcattcaagtcatcaagaccaacaagaagcatattcatagt
cgcagtgctttggagtgcgcctacaggacccatctgattgctggggtgggcttctttcaa
cacctgctgctctacatccagtcacattatcagctggagctacaggactgcattgactgg
acgcacgtcactgacccacttattggtcgtaagaaaccggtctcagccagccctaaggag
atggagtgggcccagatggcttgtcacaggtgccttgtgtacttgggagatctcgcgcgg
taccagaatgaactggcgggagtggaaacggagcagctggccgagcgcttttatcaccag
gccctgtctgtcgctcctcacgtcggaatgccgtttaatcaattgggtacactggctgga
agtaaattttataatgttgaagctacttactactacttgcgctgcattcagtcagagact
ccctttgatggtgcttatgggaatttaaagcgtctttttgacaaggcagccaagatgtac
catcaggtgaagaaacaagagatgaagaaactgtcaccatcacgccagaggtcaaaagac
atcaagagactgctggtgagcttcatgtatttgcaaagtctgttgcagcccaagaacagt
ttgatggagactgagttgacgtcactgtgccagtcggtgctggaggactttaatctggtg
ctgttctacctgccacatcctactcacggcagccaatcaaccggcgaggaggaggaagag
cacgactccatctgctctgtgttacctgacagcctcatattcaagatggtggtgacttgc
cttatggtggttcacaggctgaagcgaggagcctcaaagcagtacagtgcctccatcgcc
ttcacattggctctgttttcacatctggtcaatcatgtgaacattcgactgcaagctgaa
ctggaggagggcgagagtgacgtcacggccctgcgcactgataacacagatgagcctgag
gccagagattccagtgaagctccctctgaagacagaaccctgcaaaacggctctctggag
gaggacgaggagaaagaaaatgatgaagaagagcctacagggaatggaaggacggcggag
gtaaagaaagcactggagaagaagaggtcagcagaggagaagcaaaaacaaaagaggaag
ttctcgcgtctatccatgctccgccgcagacgatgtgctcacaaggaggacgagagcgac
ctgagcgaaggctttgagagtgatgaagaggaggatgaggaagatgccgtgccggtggac
ggtcttggatcttccagggtccagatgaactctttagcgagagaagggcggaaagaaccg
ctggcagtggatggccgctgggaaagcggttcggaggaagaagaagggggcacggctttt
gacgtcgagacggattccgacatgaacagtcaggaatctcgttcggacctggaagacata
gaagatgcagagaatgcgccacaacatcagcaaccagaggaagatgagcagccacaacca
tccagggaagaaaactcaaccccgccagcaaccaatggccctctagttactaacgatgcc
agcatcagcagtaacctacaggccatgtcttctcagcttttccagtccaagcgctgcttc
cgtcttgctcccaccttcagcaatgtgctgctccgccccccggctaccactaaccccacc
tcagactccaaccctaaacattcgaaagaaaccacaccccttccagaaaaaacatctagc
aacatgagtccagagattgttaatgggacgaatgacaatgatgctgactctgattctgaa
ggcagcgtgcacagcaaccaatcgattcccagtgaaaaaaccctttctgagcgcctggag
attctgaccaatcaggatctcatccagatagtgaaggtctttttggattggctgaggaca
aacaccgacatcatcctcatgtgtgctcagagttctcagagcttgtggaacagactctca
gtcctgcttaacttactacctgagggcaccaagattttggaagcagatctaggcttaaat
aaagaggtggcagaactcctaaatgagtctgagcggcccggtttggtccagacgttgctt
ttgcctgaggatctggcactccgccatcttcctgccctcagctcggcccatcgacgcttg
gacttcactagccagagaccttctcttagccctttggaggagtgtgtggtgcgcttgggc
tgcattcgcagctttggccacttcctcacaaatctccaaggcaacgtgctgcacttcaac
ccagaggcaggcatcttcaccagcatcagccaatcagagcaggagaacctcattcagcag
gccaaggcccagttccgtatggccgaagaggaagctcgtaggaaccgtcttatgagagac
atggcccagctgcgcctgcagttggaggtctctcagctggaaggaagtctgcagcagcca
aaagcccagtcctccatgtctccgtacctggtgccagacacttctgctctgtgccagcac
ctgggtccgctcagacagctggctgccagcggctgcttcatcatcatcatcccccgtaca
gtaatcgacggtctggacatgctaaagaaagagaatgccggagcgagagatagtatccgt
ttcctggagacggagtttcggaagggaaacagatacatccgctgtcagaaagaatcagga
agaagttttgagagggataaattaaagcgccaggatacagaagcctggcatctttataaa
atggtggacagctgtcgtcagctcacaggatctcaaaaaagcggagatgaagacacggcc
ggcatggtgaccattttaacgggacattcgctggaggagatgactgaaagatcagcttcc
atgaaggctgctgtccaggcggtggggtctgcgggcatggagctgaaaaacatcaccgag
ttttatcagcaatggaaggagatgggctga
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