Paramisgurnus dabryanus (large-scale loach): 141279935
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Entry
141279935 CDS
T10799
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdab03000
]
141279935
04121 Ubiquitin system [BR:
pdab04121
]
141279935
Transcription factors [BR:
pdab03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
141279935
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
141279935
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Ortholog
Paralog
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
ZBED1_RNase-like
zf-BED
ZBED1_RNase-like_helical
FAM200-ZBED5_RNase-like
zf-C2H2-SPIN-DOC
hAT-like_RNase-H
DUF8247
Motif
Other DBs
NCBI-GeneID:
141279935
NCBI-ProteinID:
XP_073667600
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Position
13:28004121..28006562
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AA seq
627 aa
AA seq
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MDLVSKPNATAAVWEYFGFKPNDRGEPLNVNESVCRICGKTIALKRGNTTNMHMHLKHNH
PVQFSQLGKTTAKVRDGPSSSSRQCTITGAFSRQTKYKQDSAKWCALTDSVVRFIAKEMM
PFNIVEKPSFRRMLQTFDSQYELPGRTHVSQTAIPQLYNSVKDDILNEIKDIQFYSATTD
MWSSSNMTPYMSLTIHYITADWTLHSKCLETRYVPDNHTADTLGENLNSALADWGLDEHK
LVCITTDNGANIVAAIRNLGWPWLNCFGHNLHLAVSHGLESNRDQTARAIGLCKSLVNTF
NLSWLKRRDLRKAQSEANLPQHSLILDVVTRWGTKQKMVERVLEQLPAIRRVLVEDRKHG
HLNPTWQDVSVLESINAAMKPLADFTDILSGERYVTVSSVKPVLELIKDDLLSPGPDDTA
LTASIKQNMCRVLTEKYSSPAIQLLLRKATILDPRYRGSMGEADALDDVKHQLVQELLDL
GPEGSGDEGTSGESCSKAAGENEYEPTPAVPTKKKRLSDLLQNRRAHLTNQTVAAALPKR
VQADAELTKFLQEDALDASCDPLMWWHDNQKRYPLMAKLAQKYMCICATSTSSERMFSTA
GNIATPERSCLKPHKVNMLVFLARNLP
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggatttagtttcaaaaccaaacgctacagctgcagtgtgggagtacttcggatttaaa
cccaatgaccgaggtgaaccattaaacgtgaacgagtcggtatgtcgcatttgtggtaaa
accatagcactgaaaagaggcaacacaacaaacatgcacatgcacctaaaacacaatcat
ccggtgcagttttcccagctgggaaaaacaactgctaaagttagagatggaccgtcgtct
tcatcccgacagtgcacaatcactggggcgtttagtcgacaaacaaagtacaaacaagac
agtgcaaaatggtgtgcactcacagacagtgtagttcgcttcattgctaaagagatgatg
ccctttaatatcgtcgaaaagccgtcatttcgacgaatgctgcaaacatttgacagccag
tacgaactgcctgggagaacacacgtgtcacaaacggcaattccacaactgtacaatagc
gtgaaagacgacatactaaatgagatcaaagacatccaattttactctgccactacggat
atgtggtcaagttcaaacatgaccccctatatgagcttgactatacattacataactgct
gactggaccctgcactccaagtgtttagagaccagatatgttccagataatcatacagct
gacacccttggagaaaacctaaactctgctttagcagactggggactggatgagcacaaa
ctagtctgcatcactacagacaatggtgctaacattgttgctgcaataaggaatcttggc
tggccatggctcaattgctttggccacaacctccatctcgctgtgtcccatggtctggaa
agcaacagagatcagacagcgcgtgccataggactctgtaaaagtttggtcaatacattt
aacctaagctggcttaagaggagagacttgaggaaggcacagagtgaggctaatctcccc
caacacagtctaatattggatgttgttacacgatggggcactaagcagaagatggtagag
agggtgctggagcaactccccgccataagacgtgtgctggttgaagaccgaaaacatggc
cacctcaaccccacctggcaggatgtttctgtgttggagtccatcaacgcagcaatgaaa
ccactggctgacttcacagacattctctcaggggaaagatatgtcacagtgtcctcagtt
aagcctgtgctggaacttattaaagatgaccttctctctccaggccctgatgacactgca
ctgacagccagtattaaacaaaacatgtgcagggtactgactgaaaaatacagctcaccg
gcaatccaactcctcctgagaaaggccacaatcttggatccaaggtatcgcggcagcatg
ggggaggcagatgcattggatgatgtcaaacatcagcttgtgcaagagctactggactta
ggaccagaaggaagtggagatgaaggtaccagtggtgaaagctgcagcaaagccgctgga
gaaaacgagtatgaacctactcctgccgtacccactaagaagaagaggctgagtgacctt
cttcaaaacagaagagctcatctcacaaatcagactgtggcggctgcacttccaaaaaga
gttcaggcggatgcagagctgacaaagttcctacaagaagatgcacttgatgcatcttgt
gatcccttgatgtggtggcatgacaatcaaaaaagatatcctttgatggccaagttggct
caaaaatacatgtgtatttgtgcaacaagcaccagctcagagagaatgtttagcacagct
ggcaacattgctactcctgagagatcctgccttaagccacacaaagtcaacatgttggta
tttcttgctcggaatctgccataa
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