Pasteurella dagmatis: 4362423_00856
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Entry
4362423_00856 CDS
T05467
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pdag
Pasteurella dagmatis
Pathway
pdag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4362423_00856 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdag03400
]
4362423_00856 (recB)
Enzymes [BR:
pdag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
4362423_00856 (recB)
DNA repair and recombination proteins [BR:
pdag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
4362423_00856 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
ResIII
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SNV60706
LinkDB
All DBs
Position
1:complement(909430..913134)
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AA seq
1234 aa
AA seq
DB search
MMDSPRNLNAVSTPLNTVCLIEASAGTGKTYTIGSLYLRLLLQAGVENFPLPLTVEQILV
VTFTEAATNELKGRIRERIHQTKQAFIAYKEQGESALSEEPFLQELIQHIEDIDIAIQRL
KIAEQSMDLAAIYTIHGFCRRMLMQYAFNSGVHFNLELVKDEGELIQHCFNEYWREQFYP
LSFAEANYIYNALSSPQAVRRELYSQISDFGLRPQIKQTELLALSLREFLAEYILPIQQQ
ILDLKQAWLKDEDEIIGLIENELAKSYKKGEKKALKRTTFKCNFVPKWLQTMKDWARANN
RVNLPDVLVKYFNQEALNGYAEEDVTPITHPFFELADEAVATQKMQGIYRKVIMYHYLKG
VQKLLIQHKLDHSEKGFNDLLRLLQEALYSEKGDELAQFIRLQYPFAMIDEFQDTDNIQY
QIFSKIYIQLSSSPTGFIMIGDPKQAIYKFRGADIFTYFKAALETKQKFTLGTNWRSEET
VVNAVNGLFDFDENPLVQPFLYEQIQFQPVSFRANKPKFYLNGKVQPAVQCYIGDLGKES
RNGRLNEDQRYILAETCAASIYQWLQSAVENQAVFKASRDSKEEIEPLTEERIAVLVRDW
KEAEVIKSALQKVGIASVYLSDNSNVFDCPQAQELVLILKACLNPFSERNILNAIATSIW
RLTSAEINQIKQDEQRWTNTVDDFVRYQRIWQTQSILAMLHQLFLEKKIAENLLMTEGGE
RAVTDLLHLAELLQEASPLNESPASLLRWFEKKIQGENRQGDLQIRLESERKLVKIVTFH
KSKGLEYDLVWLPFIANPPKSNDSLIQTYFNEEQKAVLWDMEGEHSDEIQRELRAEEMRL
LYVALTRAKYQVIIAMPENFSSNWNAIQYLLTQGRMDVASVRTALTAFKDRMAKQNVQIA
IDDLLDIEGKAPLLLAKPNEQLSAATFTGSIEQNWQVTSFSAISHFHEKSVLQHYLDAKQ
SAVDFSQFLSQEKDYDQNVVIDNTALVSFGTTILEGYEADYSPFDFPASARVGKVLHSYF
EKYPLNQPVEMDAVEKICQQLQLEDVWQITLQRWLTQILHTPLFSTSTFCLSDLAMKDCL
KELEFYLKLENTFDVVRFNHLLQKYHLFSEPLQLDVVREGIKGMLRGFIDLVFRHNGKYY
LLDYKSNKLGNLLSDYSTENLEKTMCKHYYHWQYLFYCVALHRYLKERDPNYQYESHFGG
VVYAFLRGMNGQSARGVYFTVPDVALIQELEELF
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgatggattcaccacgtaatttgaatgcagtcagtactccactgaatactgtttgttta
attgaagcatcggcaggtacaggaaaaacctacactattggttcattgtatttacgtttg
ttgctacaagcaggcgtagagaatttccctttaccattgacagtagagcaaattctcgtg
gtgacatttactgaagctgcgactaacgaattgaaagggcgtattcgtgaacgtattcat
caaaccaaacaagcctttattgcctataaagaacaaggtgaaagcgcactttctgaagaa
ccatttttacaagaattaatccaacacattgaagatattgatattgctattcagcgttta
aaaatcgcagaacagagtatggatttggctgcgatttataccattcacggtttctgtcgc
cgaatgttaatgcaatatgcctttaattcaggcgtacatttcaatcttgaattagtcaaa
gacgaaggggagctgatccaacattgctttaatgaatactggcgtgagcagttttatccg
ctgtcttttgctgaagcgaattatatttataatgcgttgagttcaccgcaagcggtgcgt
cgtgagctatactcgcaaatatctgattttggtttacgcccacaaatcaagcaaactgaa
ttgttagctttgtcgttgagagagtttcttgccgaatacattttgccaatccaacaacaa
attctcgatctcaaacaggcgtggctaaaagatgaagacgaaattatcggattaattgaa
aatgagttagcgaaaagctacaaaaaaggcgaaaagaaagctttaaaacgcacgacattt
aagtgcaattttgtgccgaagtggctacaaacaatgaaagattgggctcgtgctaacaat
agagtgaatttacctgatgtgctggttaaatatttcaatcaagaagcacttaatggctat
gcagaagaggatgtaaccccaatcactcatcctttctttgaattggcagatgaggctgtt
gcaacacaaaaaatgcaaggtatttaccgcaaagtgattatgtatcactatttgaaaggt
gtgcagaaactactgattcagcataaattagaccattcagaaaaaggctttaatgatcta
ttacgtttattgcaagaggcgttatattccgaaaaaggcgatgaattagcgcaatttatt
cgcttgcaatatccttttgcaatgattgatgaattccaagatacagataacattcagtat
caaatattttccaaaatttatatccaattatcttcttcaccaacgggttttattatgatc
ggtgatccaaagcaagcgatctataaattccgtggtgcagatattttcacttattttaaa
gcagcacttgaaacgaaacagaaattcactttaggtaccaactggcgttctgaagaaacg
gtggtgaatgcagtgaatggtttatttgactttgatgaaaatccgttagtacaaccattt
ttatacgagcaaatccaattccagcctgtttctttccgagcgaataagccaaaattctat
ttgaacggtaaggtacaacctgcggttcagtgttatatcggtgatttaggcaaagagagt
agaaatgggcgtttgaatgaagaccaacgttatattttggcggaaacctgtgccgcatct
atttatcaatggctacaaagtgcggtcgaaaatcaagctgtttttaaagcatcaagagat
agcaaagaagagattgaaccattaacagaagaacgtattgcagtcttagtgcgagattgg
aaagaagccgaagtcattaaatccgctttacaaaaagtaggtattgcatcggtatatttg
tctgataacagcaatgtatttgattgtccgcaagcccaagagttagttttgattttaaag
gcgtgtttaaatccatttagtgaacgtaatattctaaatgcgattgcaaccagtatttgg
cgcttaacgtcagcagaaatcaatcaaatcaagcaagatgaacaacgttggacgaatact
gtcgatgattttgtacgttatcaacgtatttggcaaacgcaaagtattttagcaatgtta
catcagctatttttagaaaagaaaattgccgaaaatctacttatgactgaagggggggaa
cgagcggtaaccgacttattacatcttgccgaattattgcaagaagcaagtccgctcaac
gaaagtccagcgagtttgttacgttggtttgagaaaaaaatccaaggtgaaaaccgccaa
ggtgatctgcaaattcgtttagaaagcgaacgcaaattagtcaaaatcgtgacattccat
aaatcaaaagggttagagtatgaccttgtgtggttaccgtttattgctaacccaccaaaa
tccaacgatagcctgattcaaacgtattttaatgaagaacaaaaagccgttttatgggat
atggaaggagaacattctgacgaaatccaacgtgagttgcgtgcagaagaaatgcgtttg
ttgtatgtagcattaacgcgtgcgaaatatcaagtgataatcgcaatgccagaaaacttt
tcttcaaattggaatgcgattcaatatttgttaacccaaggcagaatggatgtggcaagt
gtgagaactgcattgacggcatttaaagatcgaatggctaaacaaaatgtgcaaattgcg
attgatgatttgcttgatattgaaggcaaagcaccgttattgcttgcaaaaccaaacgaa
caattaagtgcagcaacttttactggcagtattgaacaaaactggcaagtgaccagcttt
agtgcgattagtcatttccatgaaaagtccgttttacaacattacttagatgctaaacaa
agtgcggttgatttttctcaatttttaagtcaagagaaagattatgaccaaaacgtagtt
attgacaatacagcgttagtttcttttggaacgacaatattagaaggttatgaagctgac
tattccccatttgattttcctgctagtgcccgagtagggaaagtgttgcatagctatttt
gagaaatatccgcttaatcaacctgtggaaatggacgcagtcgaaaaaatttgccaacaa
ttacagcttgaagatgtttggcaaatcactttacaacgttggttaactcaaattttacat
acaccattatttagcacatcaacattttgcttatctgatttggcgatgaaggattgcttg
aaagaattagaattttatttgaaattagaaaatacttttgatgtggtacgttttaatcac
ttattgcaaaaataccatttattttcggaacctttacaacttgatgtggtgcgagaaggt
ataaaaggaatgttacgcggttttattgacctagttttccgtcataatggtaaatattat
ttgcttgattataaatctaataaattaggcaacttattatctgattacagtacagaaaac
ctcgaaaagacaatgtgtaaacactattatcactggcaatatttattttattgtgtggca
ttgcatcgctatttaaaagaacgcgatccaaactatcaatatgagtcacattttggtggt
gttgtatatgcttttttacgtggaatgaatggtcaatcagctcggggtgtctattttaca
gtgcctgatgttgcattaattcaggaattagaggagttattttaa
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integrated database retrieval system
