Pasteurella dagmatis: 4362423_01312
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Entry
4362423_01312 CDS
T05467
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdag
Pasteurella dagmatis
Pathway
pdag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4362423_01312 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdag03400
]
4362423_01312 (mfd)
Enzymes [BR:
pdag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4362423_01312 (mfd)
DNA repair and recombination proteins [BR:
pdag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
4362423_01312 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
DUF6007
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SNV72134
LinkDB
All DBs
Position
1:complement(1393434..1396871)
Genome browser
AA seq
1145 aa
AA seq
DB search
MTTKYFDLAIPTEANDHKILGNVLAGADALAINEIASQYSGLTVVLTADTRSAVRLEKVL
SQFSQHPITFFPDWETLPYDAFSPHQEIISYRLSALFQLQHRQKGILILPISTLMQRLCP
PEFLQHNVLLIKKGDRLQINKIRLQLESAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVP
FRLDFFDDEIDTIRTFDVDTQRTLEEIKEINLLPAHEFPTDEKGIEFFRSQFRETFGEIR
RDPEHIYQQVSKGTLISGIEYWQPLFFEQMATLFAYLPKNSLWIDIGDIQAQGERFYQDA
QQRYESRKVDPMRPLLAPERLWLRIDEINRELKRYPRISFNAEKVRSSVRQKNLAVQALP
ELTIQSQQKEPLKLLRQFTEQFKGNVVFSVESEGRRETLRDLLSPLKIMATKITALSQVK
DKFSLLISGLENGFIVEQDQPVALITETELLGERVQQRSRDKRKSVNPDTLIRNLAELKI
GQPVVHLEHGVGRYAGLVTLENGGITAEYLLLNYANESKLYVPVSSLHLISRYVGGSDET
APLHKLGSDAWVKARHKAAEKIRDVAAELLDVYAQREAQKGFAFNYDREEFQQFAATFPF
EETIDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTT
LLAQQHYENFKDRFANLPVNVEVLSRFKTTKEQKQVIQNLEEGKVDILIGTHKLIQSDVQ
FHDLGLLIIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMAMHGIRDLSIISTP
PARRLTIKTFVKQADDLVIREAILREILRGGQVYYLHNDVASIENCAEKLTALVPEARIT
VGHGQMRERELERVMSDFYHQRFNVLVCSTIIETGIDVPTANTIIIERADNFGLAQLHQL
RGRVGRSHHQAYAYLLTPPPKTMTKDAQKRLEALESLDNLGAGFILATHDLEIRGAGELL
GSEQSGQIESVGFSLYMDLLESAVNALKAGREPSLDELTQQQVEIDLRLPALLPEDYLGD
VNMRLSFYKRIAGAENKNALDELKVELIDRFGSLPEATRNLFQIAELRQMAKTVQIQKID
GNAQGGFIEFSPNAELDPMKFLQLIQTEPTVYRFDGPTKFRFNKAFTSHKERLDFVENLI
NQIKD
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccaaatatttcgatttagccattccgacagaagccaatgatcataaaatttta
ggcaatgtattagccggcgcagatgcgttagcgattaacgaaattgccagccaatattca
gggctgacggtggtcttaactgcagatacacgaagtgcggtgcgtttagaaaaagtttta
tcgcaattcagccaacatccaattacatttttccccgattgggaaactttaccttatgat
gccttttctcctcatcaagaaattatttcctatcgtttaagtgcgttatttcaattacag
catcgtcaaaaaggaattttgattttaccaattagcaccttaatgcaacgtttatgtcca
ccggaatttttacaacataatgtgctgttaattaaaaaaggtgatcgattacaaattaat
aaaatacgtttacaactggaaagtgctggctatcgtgctgtggagcaagtgcttgaacac
ggcgaatacgcagtgcgtggtgcgttgttggatcttttcccgatgggaagtgcggtgcct
tttcgcttagatttttttgatgatgaaattgataccattcgcacatttgatgtggataca
cagcgcacattagaagaaatcaaagaaattaatttattgccggctcacgagtttccgacc
gatgaaaaaggcattgaatttttccgttcccaattccgagaaacctttggcgagattcgt
cgtgatcctgaacatatttaccaacaagttagcaaaggcacattaatttccggtattgaa
tattggcagccactcttcttcgagcaaatggcaacgctgtttgcgtatttaccgaaaaat
agtttatggattgatataggcgatattcaagcacaaggcgaacgtttttaccaagatgca
cagcaacgctacgaaagccgtaaagtcgatccgatgcgacctttgttagcaccagaacgt
ttatggttacgtattgatgaaattaatcgtgaattaaaacgttacccgagaatcagcttt
aacgcagaaaaagtgcgttcttcagtgcgtcagaaaaatttagccgtacaagcattacct
gagctgacgattcaatcacaacaaaaagaaccgttaaaattattacgtcaatttactgaa
caatttaaaggcaatgttgttttctctgtggagagtgaaggacgtcgtgaaaccttacgt
gacttactttcaccattgaaaataatggcgacaaaaatcaccgcactttcacaggtaaaa
gataaatttagcttgttgattagtggcttagagaacggctttattgtcgaacaagatcag
cccgtagccctcattactgaaacagaattattgggcgaacgtgttcagcaacgtagccga
gataagcgaaaatctgttaatcctgacactttaattcgtaaccttgcagaattaaaaata
ggtcaacctgtagtgcatttagaacacggtgtgggacgttatgcgggattagtcacgctc
gaaaacggtggcattaccgcagaatatttgctgttaaattatgctaatgaatccaaactt
tatgtgccagtgtcctctttgcatttgatcagccgttatgtgggcggttcagatgaaact
gcgccattgcacaaattgggtagtgatgcatgggtaaaagcacgtcataaagcggcagaa
aaaattcgcgatgtcgcagcagaattgttagatgtctatgcacaacgtgaggcacaaaaa
ggttttgcctttaattatgatcgtgaagagtttcagcaatttgccgccactttcccattt
gaagaaactatcgatcaggaaatggcaattaatgcagtgatttcggatatgtgccagcca
aaagcaatggatcgtttggtgtgtggtgatgtgggctttggaaaaacagaagtggcgatg
cgtgcagcatttttagcggtaatgaatcataaacaagtcgctgtgttagtgccaacaacc
ttgcttgcgcaacagcattatgaaaactttaaagatcgttttgcgaatttgccagtaaac
gtggaagtgctctcacgatttaaaaccaccaaagagcaaaaacaagtgatacaaaacttg
gaggaaggcaaagtggatattctgattggtacgcataaattaatccaatctgatgtgcag
tttcacgatctgggtttattgattattgatgaggaacaccgctttggcgtgcgccaaaaa
gaacgtattaaacagctacgtgccaatattgatattctgactttaacagcaacgccaatt
cctcgaaccttgaatatggcaatgcacggcattcgtgatctttcgatcatttctacccca
ccagcgcgtcgtttaaccattaaaacctttgtgaaacaagcggatgatttagtgattcgt
gaggcgatcttgcgtgaaatcttgcgtggaggacaggtttactatttgcataatgatgtg
gcaagtattgaaaattgtgcagaaaaactgaccgcacttgtaccagaagcacgcattaca
gtggggcatgggcaaatgcgtgagcgtgaactcgaacgtgtaatgtcagatttttatcac
cagcgttttaatgtattagtctgttcaactatcattgaaacagggatcgatgtaccaacc
gcgaatacgatcattatcgagcgtgcggataactttggtttggcacagttgcatcagttg
cgtggacgtgttggccgttcacatcaccaagcatacgcctatttgttaacgccaccgcca
aaaaccatgacaaaagatgcacaaaaacgccttgaggcgttggaaagcttagataattta
ggtgctggctttattcttgcgactcatgatttggaaattcgtggtgcaggtgaattattg
ggttcagaacaaagcggacaaattgagtcggtgggtttctcgctgtatatggatttatta
gaaagtgcagtgaatgccttaaaagcagggcgtgagccatctttagatgagttaacgcaa
cagcaagtggaaattgatttacgtctgccagccttgctaccagaagattatttaggcgat
gtgaatatgcgtttgtctttctataaacgtattgcaggggctgaaaataaaaatgcgtta
gatgagttaaaagtggaattaatcgaccgttttggttcgttgcctgaagcaactcgtaat
ttattccaaattgctgaactgcgccaaatggcaaaaactgttcagattcagaaaatcgat
ggcaatgcgcaaggcggtttcattgaattttcaccaaatgctgaattagacccaatgaaa
ttcttacaactaatccaaacagagccaacagtttaccgtttcgatggcccgactaaattt
agatttaataaagccttcacgagccataaagagcggttggattttgttgagaatttaata
aatcagatcaaagattaa
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