Pasteurella dagmatis: 4362423_01500
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Entry
4362423_01500 CDS
T05467
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdag
Pasteurella dagmatis
Pathway
pdag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4362423_01500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdag03021
]
4362423_01500 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdag03400
]
4362423_01500 (rpoC)
Enzymes [BR:
pdag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4362423_01500 (rpoC)
Transcription machinery [BR:
pdag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
4362423_01500 (rpoC)
DNA repair and recombination proteins [BR:
pdag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
4362423_01500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
SNV74680
LinkDB
All DBs
Position
1:complement(1620772..1625025)
Genome browser
AA seq
1417 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLDKGQLLTEEQYLDAEDRWGDEFDAK
MGAEAIQALLRDMDLALECENLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGFASTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNGKGEGMLLQDPREAEKAYRT
GQAELHSRVKVRITEYVKNVAGEFEPHTNLVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGMKPSVLFADQIMYTGFAYAARSGSSVGIDDMVIPAKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTEEVLIARNTLLDEKLCDVIDANSVDSIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNTGTLR
LANVKFVTNNEGKLVLTSRNTELTIIDAFGRTKEHYKVPYGAVLSKADGQDVTAGETVAN
WDPHTMPVVSEVSGFVKFVDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPAIK
LVDAKGNDILIPGTDVVAQYFLPGKAIVTLDDNAEVHIGDPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVERGDLISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAIITKAYDSEFLEGEQVEVARIKIVNRKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRQKKVMMRDEMP
VKLSAADEEEIAAEFTVTAEDATASLAEMLNMADDAE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaacgagtgaagattttgatgtg
atcaaaattggtttagcatcaccggatatgatccgttcttggtcatttggtgaagttaaa
aaacctgaaaccattaactaccgcacatttaaaccagaacgtgacggtcttttctgtgca
cgtatttttggaccagtaaaagattacgaatgtttatgtggtaaatacaaacgcttaaaa
caccgtggtgtaatctgtgaaaaatgtggcgttgaagtaacacaaaccaaagtacgtcgt
gagcgtatggggcatattgagcttgcttcacctgttgcacatatttggtttttgaaatca
ctaccatcccgtattggtttattgcttgatatgccattacgtgacattgaacgtgtttta
tattttgaatcatacattgtgatcgaaccgggtatgactgatttagataaaggtcagtta
ttaacggaagagcaatatttagacgcagaagatcgttggggtgatgagttcgatgcaaaa
atgggtgcggaagccatccaagctttattgcgtgatatggatttagcacttgaatgtgaa
aacttacgtgaagaattacaagaaactaactcagaaacaaaacgtaagaaaatcactaaa
cgtttaaaattattagaagcgtttattcaatctggtaacaagccagaatggatggtgatg
actgtattaccagtattaccaccagatttacgtccgttagtgccacttgatggcggtcgt
ttcgctacttcagatttgaacgatttataccgtcgtgtaatcaaccgtaataaccgttta
aaacgtcttttagacttaatcgcacctgatatcattgtgcgtaacgaaaaacgtatgtta
caagaatctgttgatgcgttattagataatggtcgtcgtggtcgtgctattactggctct
aaccgccgtccattaaaatcacttgcggatatgattaaaggtaaacaaggtcgtttccgt
caaaacctattaggtaaacgtgttgactattcaggccgttctgtaatcactgtaggtcca
tacttacacctacaccaatgtggtttaccgaagaaaatggcattggagttattccgtccg
tttatctatgcaaaattagaaagccgtggcttcgcttcaacgattaaagctgcgaagaaa
atggtcgagcgtgaagatgcgatcgtatgggatattttagcggaagttattcgcgaacat
ccaattttattaaaccgtgcaccaacattgcaccgtttgggtattcaggcatttgaacca
ttattgatcgaaggtaaagcaatccaattacacccacttgtttgtgcggcgtttaatgct
gactttgatggtgaccaaatggcggtccacgtaccattgacattagaagctcagttagaa
gcacgtgcattaatgatgtcaaccaacaacattttatcaccagcaaatggtgagcctatt
atcgttccatcacaagacgttgtattaggtctttactatatgacacgtgataaagttaac
ggtaaaggcgaaggaatgttgttacaggaccctcgtgaagctgaaaaagcgtatcgtaca
ggtcaagctgaattacattctcgtgtgaaagtgcgtatcactgaatatgtgaaaaacgta
gcaggtgagtttgagcctcatactaacttagtagatactacgattggtcgcgcgattctt
tggatgattgcaccaaaaggtatgccatttagcttgtttaaccaaacattaggtaaaaaa
gcaatttctaagttaatcaacgagagctatcgtcgtttaggtatgaaaccaagcgtacta
tttgctgaccaaattatgtataccggttttgcatatgcagcacgttctggctcatcagta
ggtattgatgatatggtcattcctgcgaagaaatacgaaattatttctgcggcagaagag
gaagttgctgaaatccaagagcagttccaatcaggtttagttactgctggtgaacgttat
aacaaagtgatcgatatttgggctgctgcaaacgaacgtgttgctaaagcgatgatggaa
aacttgtctacagaagaagtaattaaccgtgaaggcaatccagagaagcaggcatccttt
aatagcatcttcatgatggcggactctggtgctcgtggttctgcggcacagattcgtcag
ttagcaggtatgcgtggtctaatggctcgtccagatggttcgatcatcgaaacgccaatt
acggcaaacttccgtgaaggtctaaacgtattacagtactttatttcaacccatggtgca
cgtaaaggtcttgcggatactgcattgaaaacagcaaactcaggttacttaacccgtcgt
ttagttgatgtggcacaagacttagttatcatcgaagatgattgtggtacacacgaaggt
atcgtgatgaccccattaattgagggtggtgacgttaaagaagcattacgtgatcgcgta
ttaggtcgtgtagttgcagaagacgtattaaaaccaggtacagaagaagtattaattgca
cgtaataccttattagatgagaaattgtgtgatgtgatcgatgcaaattctgttgatagt
atcaaagtacgttcagtagtaacttgtaacacagactttggtgtgtgtgcgaaatgctac
ggacgtgatcttgcacgtggtcacttgattaaccaaggtgaggcagttggtgttattgca
gcacaatcaattggtgaaccgggtacacagttaacgatgcgtacgttccatatcggtggt
gctgcgtctgcagctgcgaaagagtcaagtatccaagtgaaaaatacgggtacattacgc
ttagcgaacgtaaaattcgttactaacaacgaaggtaaattagtattaacttcacgtaac
actgaattaactattattgatgcattcggtcgtactaaagaacactataaagtgccttac
ggtgcagtcttaagcaaagctgatggtcaagatgttacggcaggtgagaccgttgcaaac
tgggatccacatacaatgccagttgtatctgaggtgagcggttttgttaaattcgttgac
atcgttgatggtttaactgtcactcgtcaaactgatgaattaacaggtttatcatcaatc
gtagttcaagatgtcggggagcgtgcaacagcaggtaaagatttacgtccagcaatcaaa
cttgttgatgcgaaaggtaacgatatcttaatcccaggtacagacgttgttgcgcaatac
ttcttaccaggtaaagcgatcgtaacattagacgataacgcagaagttcatatcggtgac
ccattagcacgtattccacaagaatctgttggtacaaaagatattactggtggtcttccg
cgcgttgcggacttatttgaagcgcgtaaaccgaaagagccagcaatcttggctgaaatt
tctggtatcgtgtcattcggtaaagaaacaaaaggtaaacgacgcttattaatcacacca
gctgaaggcgaaacttacgaagaaatgattccaaaatggcgtcaactcaacgtatttgaa
ggtgagatggtcgaacgtggtgatttaatctctgatggtgcagaaacgccacatgatatt
ttacgtttacgtggtgttcatgctgtaactgattatatcgttaatgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaagtcatcgtacgtcagatg
ttacgtaaagcaatcatcactaaagcttatgactctgaattcttagagggtgagcaagtt
gaggttgcacgtattaagatcgtgaaccgtaagcgtgaagctgaaggcaagccattagtt
gaatttgaacgtgagttacttggtattaccaaagcatctcttgcaactgagtcatttatc
tctgcagcatcattccaagaaacaacacgtgtgttaactgaagctgcagttgcgggtaaa
cgtgatgaattgcgtggcttgaaagagaatgtaatcgtcggtcgcttaatccctgctggt
acaggtttcgcatatcaccaaaatcgtcagaagaaagtgatgatgagagatgaaatgcca
gttaaattatcagcagcagatgaagaagaaattgcagcagaatttactgttactgcagaa
gatgcaacagcaagtttagcagaaatgttaaatatggctgatgatgcagaataa
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