Pasteurella dagmatis: 4362423_01720
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Entry
4362423_01720 CDS
T05467
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pdag
Pasteurella dagmatis
Brite
KEGG Orthology (KO) [BR:
pdag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdag03009
]
4362423_01720 (rimO)
Enzymes [BR:
pdag01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
4362423_01720 (rimO)
Ribosome biogenesis [BR:
pdag03009
]
Prokaryotic type
ribosomal protein modification factors
4362423_01720 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
Mur_ligase_C
YajR_YAM
CLP1_P
Methyltransf_2
Sigma54_CBD
TRAM
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
SNV80386
LinkDB
All DBs
Position
1:1844873..1846207
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AA seq
444 aa
AA seq
DB search
MTSSAPNIGFISLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQE
SLEAIGEALEENGKVIVTGCLGAKEDRIREVHPKVLEVTGPHSYEAVMTQVHKYVPKPEY
NPYTALVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSITQVLDEAKRLV
DAGVKELLIVSQDTSAYALDQSKEVQNKTVFWNGMPIKNNLMSLCEQLGKLGVWVRLHYV
YPYPHVDDLIPLMAEGKLLPYLDIPLQHASPKVLKAMKRPGSIDRTLERIKKWREICPEL
TLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGCFKFSPVEGAVATDMPDQVPEDVKEE
RFHRFMQLQQEISAQRLQQKVGKILSVIIDEIDEEGIIGRSMADAPEIDGVVYIDNVSQI
DVKVGQIIQVEITQADEYDLWGTC
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacatcttcagctcccaatattggcttcattagtttaggttgtccaaaaaaccttgtt
gattctgaacgtattttgaccgaattacgctcggatggttataacattattcccagttac
gaaaatgcagatcttgtgatcgtaaatacctgcggtttcattgatagcgcagtgcaagaa
tctttagaagccattggcgaggcattggaagaaaatggcaaagtgattgtaactggttgc
ttaggtgcaaaagaagaccgtattcgtgaagtgcacccgaaagtacttgaggtaacaggt
ccacatagttacgaagcggtaatgacacaagtacataaatatgtgccaaaaccagaatat
aatccttatactgcacttgtaccaaaacagggtgtgaaattaacgccaaaacattacgct
tatttaaagatttcagagggttgcgatcatcgttgcacattctgtatcattccatcaatg
cgcggagatttagatagccgttcaattacccaagtattagacgaggcaaaacgtcttgtt
gatgccggcgtgaaagaactgttgattgtgtcacaagacacttctgcttatgcgttagac
caaagcaaagaagtacaaaacaaaactgtgttttggaatggaatgccaattaaaaataac
ttaatgagtttatgtgagcaattaggaaaattaggtgtatgggtgcgtttacattatgta
tatccgtatccacacgtagatgatttaattccattaatggctgaaggtaaattattacct
tatcttgatattcctctacaacacgcaagcccaaaagtattaaaagcaatgaaaagaccg
ggttcaatcgaccgcactttagagcgtattaaaaagtggcgtgagatttgcccagaattg
acattacgttcaaccttcattgtgggtttccctggcgaaacagaagaagatttccaatta
ttattagatttcctcaaagaagcacaacttgatcgagttggctgcttcaaatttagtcct
gtcgaaggcgctgtggcaacggatatgccagatcaagtgcctgaagacgtaaaagaagag
cgcttccaccgctttatgcaattacagcaagaaatttcagctcagcgtttacaacaaaaa
gttggaaaaatcctgtctgtgattattgatgagattgacgaagaaggtattatcggccgt
tctatggctgatgcacctgaaattgatggtgtggtttatattgataatgtaagccaaatc
gacgtcaaggtggggcaaattatccaagtcgaaattacccaagcagatgaatatgatctg
tggggtacttgttaa
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