Pasteurella dagmatis: 4362423_01993
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Entry
4362423_01993 CDS
T05467
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pdag
Pasteurella dagmatis
Brite
KEGG Orthology (KO) [BR:
pdag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdag03009
]
4362423_01993 (srmB)
Enzymes [BR:
pdag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4362423_01993 (srmB)
Ribosome biogenesis [BR:
pdag03009
]
Prokaryotic type
rRNA helicases
4362423_01993 (srmB)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SNV83702
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All DBs
Position
1:2133276..2134604
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AA seq
442 aa
AA seq
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MTSATFDDFDLDPALLKALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLL
PAIQHLLDYPRRKPGAPRVLVLTPTRELAMQVAEQAEELSAFTNLSIATITGGVAYQNHG
EVFNKNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRW
RKQTLLFSATLEGELLVDFAGRLLTDPVEIDAEPSRRERKKIQQWFYHADSNEHKIKLLA
RFIEEEKVSRGIVFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVT
VLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLL
GKIKRYTEELLKARVIEGLEPRTKAPKDGEVKTVTKKQKARIKAKRDEKQKQEQKKKTKL
RHKDTKNIGKRRKPSSATNSAE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagcaacttttgacgattttgatctcgaccctgccttactaaaagctttggca
aaaaagggctacacacgcccaactgcaattcagcaagaaactatcccagctgcaatggaa
gagcgtgatgtgttaggttcagcaccaacaggcacagggaaaaccgccgcatttttatta
ccggcaattcaacatttattagattatccacgccgtaaaccgggcgcacctcgtgtgctt
gtattgactccaactcgtgaattggcaatgcaagtggcagagcaagcagaagagctttct
gcattcacaaatttaagcattgcgacaattaccggtggtgtggcatatcaaaaccacggt
gaagtgtttaataaaaaccaagacatcgtagtggcaacgccagggcgtttattgcaatac
attaaagaagaaaactttgattgtcgttctgttgagattttgatcttcgatgaagcggat
cgtatgttacaaatgggctttgggcaagatgctgaaaaaatcgctgcggaaacccgttgg
cgtaaacaaactttattgttctcagcaaccttagaaggtgagttgctggtggatttcgca
gggcgtttattaacagatcctgtggaaatcgatgctgaaccaagccgtcgtgagcgtaaa
aaaatccaacaatggttctatcacgctgatagcaatgagcataaaatcaaattgctcgcc
cgttttattgaagaagaaaaagtgagtcgcggtattgttttcgtgcgtcgtcgtgaatat
gtgcgtgagttgtcagaaactttgcgtaaacgtggtattcgttctacttatttagaaggc
gaaatggcacaaactcaacgtaataatgcgatcgataaactgaaaaatggtgtagtgaca
gttttggttgcaacggatgttgccgcgcgtggtattgatattgaagatgtcagccacgta
atgaactttgatttaccatatagcgcagacacttatttacaccgtattgggcgtactgcg
cgtgcaggtaaaaaaggcgttgcggtgtcttttgtcgaagcacacgactataaattactc
ggcaaaattaaacgttataccgaagaattattgaaagcgcgcgtaattgaaggcttagag
ccacgcactaaagccccgaaagatggcgaagtgaagacggtcactaaaaagcaaaaagca
cgtattaaagcgaagcgtgatgagaagcaaaaacaagagcagaaaaagaaaacaaaactg
cgccataaagacactaaaaatattggaaaacgccgtaaaccaagttcagcaacgaacagt
gcagaataa
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