Pasteurella dagmatis: 4362423_02066
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Entry
4362423_02066 CDS
T05467
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdag
Pasteurella dagmatis
Pathway
pdag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4362423_02066 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdag03019
]
4362423_02066 (rne)
03009 Ribosome biogenesis [BR:
pdag03009
]
4362423_02066 (rne)
Enzymes [BR:
pdag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
4362423_02066 (rne)
Messenger RNA biogenesis [BR:
pdag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
4362423_02066 (rne)
Ribosome biogenesis [BR:
pdag03009
]
Prokaryotic type
rRNA processing factors
4362423_02066 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
RecD_N
Motif
Other DBs
NCBI-ProteinID:
SNV84442
LinkDB
All DBs
Position
1:2211262..2214222
Genome browser
AA seq
986 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDDYVYQGRPNIRDILSEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSQKVYEKA
KAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSL
SILRLIEEEALKENTKQVHTIVPVEIASYLLNEKRRAINNIEKRHDVDVIVVPNEAMETP
HFSVFRVRDGEEVNELSYNLVKLHQEQDDHFVPEESLVSRNIEAAAVTTESVLESAAVSI
SIPTPAPVPEKKVESKPSLLARIVAKIKALFASKPAEEEKSKNPRNRNNRNRRNQERRNN
RRSRSENVERENTLKRNEEEVVARPSKSDRKRNRKANVVENIVDTSAIVETQQVDVVETE
KTEQVTQRRQRRDLRKKVRITDGVVEEKPALTEEKAVVGVVDSPIEQNVIEMPGEVILDE
VIVAVEEGENEKRRDNRRRLPRHLRVSNQRRRRNQTEQKSPMPLFAAVASPELASGKVCI
DYNNVVSLKETQQFLSVDELLEQQEQPKDIIATTPAIDIVINEMEKGTKPFNPFMTQPAN
ESVEKKVQASLERLNAEQLLVETIEVTKQVVELEADVDVGSNESQVVSTELVLEKDAKEQ
SEPIEIKIMSENDRTFNFTGRLGTISAVKHTKAEMTLAKASDEVLEMVRIPAWTESRYYF
HGKGSAGHHSAISHVYAEPTRAESKE
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaaaaagaagagttgcgcgttgcacttgttgat
gggcaacgtttatttgacttggatattgaaagtccaggacatgagcaaaaaaaagcaaac
atttacaaaggccgtattactcgcgttgaaccaagtcttgaagctgcgtttgttgactat
ggtgcagaacgccatggtttcttaccattaaaagaaattgcacgtgagtatttcccagat
gactatgtttatcaaggtcgtccaaatattcgtgatattttgagcgaaggacaagaagtt
atcgttcaagtgaacaaggaagagcgtggaaacaaaggtgctgcattgacaacttttgtt
tctttagcaggaagttatttggtgattatgccaaataatccaagagcaggaggcatttca
cgtcgtattgagggtgatgagcgtctagagttaaaagatgcattgagttctttggaagta
ccagatggtgtcggattaattgttcgtactgctggtgtgggtaaatcccctgaagaatta
caatgggacttaaaagtgttgctacaccattgggaggcgattaaacaagcttcgcaaagc
cgcccagccccatttttaattcaccaagaaagtgatgtgatcgtgcgtgcaattcgtgat
tatctacgtcgtgatattggtgaaatcttaattgatagccagaaggtgtatgaaaaggca
aaagcacatatcaagttagtgcgtcctgatttcattaaccgtgtaaaactttaccaaggt
gaagtacctcttttcagtcactatcaaattgaatcgcaaattgaatctgcattccaacgt
gaggtgcgtttaccatcaggtggttcaattgttatcgatgtgactgaagcattaacagcg
attgatattaactcatctcgttcaacacgtggcggagatatcgaagaaaccgcattaaac
accaatttagaagccgcagatgaaattgcacgtcaattacgtttacgtgacttaggtggt
ttgatagttatcgactttattgatatgacgccagttcgtcaccaacgtgaagttgaaaac
cgtattcgtgatgcggttcgtcaagatcgtgcacgtattcaaattagtcgtatttctcgc
tttggcttattagaaatgtcgcgtcagcgtttaagcccatcattaggggagtcttctcat
cacgtctgcccacgctgtcaaggtacaggaaaaattcgagataatgaatcgctttcatta
tcgattttacgcttaatcgaagaagaggcattaaaagaaaatactaaacaagtacataca
attgtgcctgtggaaatcgcatcttacttattgaatgaaaaacgtcgtgcaatcaataac
attgaaaaacgtcacgatgtggatgtgattgtagtgccaaatgaagcaatggaaacacca
catttcagcgtgttccgtgtacgtgatggcgaagaggtgaatgaattaagttataactta
gtgaaacttcaccaagagcaagatgatcatttcgtgcctgaagaatctttagtatcacgt
aatattgaggctgcagcagtgactactgaaagtgtgttagaaagtgcagctgtttctatt
tcaattccaacgcctgcaccagtgccagagaaaaaagtggagagcaagccgtctttatta
gctcgcattgtggcaaaaattaaagcattgtttgcaagcaaaccagctgaagaggaaaaa
tcgaaaaatcctcgtaaccggaacaaccgcaatcgccgtaaccaagaacgtcggaataat
cgtcgctctcgctcagaaaatgtggaacgtgaaaatacactaaaacgtaacgaagaagaa
gttgttgctcgtccgtcgaaatcagatcgtaaacgtaatcgtaaagcaaatgttgtagaa
aatatagttgacacttcagcaattgtagaaacacaacaagttgatgtagttgaaactgaa
aaaactgaacaagtgacacaacgtcgtcaacgtcgagatttacgaaagaaagtgcgtatc
acagatggagtagtagaagaaaaaccggctttaacagaagaaaaagcagttgtaggggtt
gttgatagtcctattgagcaaaatgtaatagaaatgccaggagaagtgattctggatgag
gttattgtagccgttgaagaaggtgaaaatgaaaaacgccgtgataatcgtcgccgtttg
ccacgtcatttacgcgtaagcaaccaacgtcgtcgtcgtaatcaaactgaacagaaatca
cctatgccattatttgcagcggtagcttcaccagaactagcaagtggtaaagtgtgcatt
gattacaataatgtagtgagcttgaaagaaactcaacaattcttgtcagtagatgagtta
cttgaacagcaagagcaaccaaaagatattattgcaacaacgcctgcaatagatatcgtg
attaatgaaatggaaaaaggtactaaaccatttaatccatttatgacacaacctgcaaac
gagtctgtggagaaaaaggtccaagcctctcttgagcgtttaaatgcagagcaacttttg
gttgaaactatagaggtaacgaagcaagtggttgagttagaagctgatgtcgatgtagga
agcaatgaatctcaagttgtttctaccgagctagttcttgaaaaggatgctaaagagcag
tctgaacctattgaaattaaaataatgtcagaaaatgaccgcacttttaactttactggt
cgtttaggcacaatttccgcagtgaaacatacgaaagcagaaatgacattagctaaagca
agtgatgaagtgcttgaaatggtgcgtattccggcttggacggagtcacgttattacttc
catggtaagggctctgcgggtcaccacagtgcgattagtcatgtttacgcagaacctaca
agagcagaaagtaaagagtaa
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