Pseudomonas allii: PALTO1_54140
Help
Entry
PALTO1_54140 CDS
T12099
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pdal Pseudomonas allii
Pathway
pdal02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pdal00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PALTO1_54140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdal03021
]
PALTO1_54140
Transcription machinery [BR:
pdal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PALTO1_54140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
HTH_24
BrxR_CTD
HTH_29
HTH_17
Sigma70_r3
MerR
HTH_31
Motif
Other DBs
NCBI-ProteinID:
BFY84245
LinkDB
All DBs
Position
6012292..6012810
Genome browser
AA seq
172 aa
AA seq
DB search
MSSIQNPRSELVGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELREPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPESEHPSPEEQQLILEDLKAIDRLLGKL
SSKARAAFLYNRLDGLGHAEIAQRLGVSVPRVRQYLAQGIRQCYIALYGEPQ
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtcgatccagaacccacgcagtgagcttgttggtgcgttgtatcgcgaccatcgt
ggctggctgctggcctggcttcgacgtaacgtggcctgccccagccgcgccgaagacctg
agccaggacaccttcatgcggctgctgggccgtgacgagttgcgtgaaccccgtgaaccc
cgtgcgtttctggtggcaatcgccaagggcttgctgttcgactacttccgccgcgccgcc
ctggaacaggcctacctcaccgaactgatgctgatcccggaaagcgaacacccctcgccg
gaagaacagcaactgatcctcgaagacctcaaggccatcgaccgcttgctcggcaagttg
tcgagcaaggcccgcgccgccttcctctataaccgcctcgacggcctgggccacgcggaa
atcgcccagcgcctcggcgtctcggtgccgcgggttcgccaatatctggcccagggcatt
cgccagtgctacatcgcactgtacggcgagccacaatga
DBGET
integrated database retrieval system
