Pocillopora damicornis (lace coral): 113664144
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Entry
113664144 CDS
T05773
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113664144
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113664144
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113664144
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
113664144
NCBI-ProteinID:
XP_027035542
LinkDB
All DBs
Position
Unknown
AA seq
1697 aa
AA seq
DB search
MPMVEDSDENDSKPKLDIGMNMRRVSKFYDGPKVRPQYLNILTDFVDAEIFLIDGDSLLL
ELLCQSSLDWQHGGQFLHLTYLLERFLQYFKDKGGVFHVVFFKEVEIIWKSRPSMLLARQ
VLILHLQHNTPFITETSIASVWDKHWKEFIDRNIPAFLVLTDAENVPWKKTGETKMLDET
VEFFFRCLLLHCLGQGLNCVFISGVQMTATKVMGYYNESTSEHRLFFRKYGKAVRDTWDW
LMGYWRRQCTQENIAGCVVTENQIDIQSEVQVALQSPPQGGCREVATILACVQVLLLLLH
NDNISKDTMKAAEDKVKLFLLQSALLKKLPLKYRAHTVNSSLLDEFCKAKDGKVYPFHEI
HTSLWQILRVIESVLRDAYKDDSAANVLEMTSVADLMDGRLVHTLFWLIMKQISQGSKDL
SLPQDVKRDVESAWEKVVALVNGSCHSHSLESQFFPLFDGSSTSLHHEERTNPDQVSGAK
LKRLLDVGSVLVNEYVGDIRSRINAMAGDETEDEVLLIGKEFDEQYHWHSLRPLSDDYDR
TKQSFTDKPPTDPKERKWYFKQKMKYVRYQRFYGNSIVGGVDKAKIITVKEEVAKKKKGK
NKDGKMGEKAKRIIEQNDKKRKDEERKKDQEKWNNFLKDIDNNLKKDKFSTVLQLVDKYL
EDCKTPELHLQALMKKAQSCLGAWQQTRAADAESNDMKYPVLLLKSVQKMAEDFHSLLTV
KEKKKLAGFMRKLGFDDIAATLYDLPEESERKAQQLSVHTTSTRFQLDCMGHLLKRETRT
DRDSRVDHFIPDTWQRELLDAVDKNESAVIVAPTSSGKTFASYYCMEKVLTQDNDGVVVY
VSPTKALVNQVAATVYARFHRKQLPEGRAVYGVFTRDYRFNTLNSQILVTVPQCLEILFL
SPRRQDWTKNVRYVIFDEVHCLGQEIGAEVWEHLLLLIRCPFLALSATIGNPDDLTRWLQ
AAQNFREQQDKQENCPMRKSYRIRLVTFHERYSDLEKNVYLPSPSNGGFSEESMEYEGVY
DVKATREFVRLHPCAQLGAKQLQENSFPRDMDFTPQESLQLFDVMAKHWPNKESLQKLSP
ERYFEKNKFIDKSCARRYEKDLKREFKSWADEKHLEKVQAVIQSLNSVLLEKQASTEEEW
TQLGMASLGKLFIWSNFPKLVEQLKAQGKLPALVFSFDRIFCEELAFGLAQHFRKREKLI
KGQNNWKDLKLAIKRVRKAEKKFKRLRDGEAESTKEERLCRQVGQQYEKDFSVLTGPIPE
CTLAFTHEIGNEDLQKIMGRIWSVHGFSQLKNALRRGISYHHAGLKNRIRCCVEMLFREK
YLQVVTATGTLALGIHMPCKTVVFAGDSPFLNSLQYRQMSGRAGRRGFDPVGNVVFFGVP
FRKIQRLITANVPKIVGNFPINHKICQPGKNGKFSDDVLRKMVLVLSHLFGRRYLHPSYK
RAVHLCPTSKVILEDLPDEFATALREYNRQVTDVFSQYLTTVAADLEKERGEENKLPLSG
IEFPKQASVGDDEKYDVIEGLVSSSIPYSACSSFAALSGNSDIQLHSSSETAASYPKSHE
RNVDVAKENAAVELYEEDIEEEPIDHLLEIVRRDVYTDIHVVPILRLKKCNSVGSAMPLN
AYALDFFKHGSAKVIEKENGIKAGEVFQVLKDFVLTMKSISTSLEELGPEGDNVVVAFKQ
LAEEYGNKFRKQFDADI
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgccaatggtagaagattctgatgaaaatgactctaagccaaaactcgacattggcatg
aatatgcgccgtgttagtaaattttacgatggtccaaaagttaggccacaatatctcaac
attctgacagactttgttgatgcggagattttcctgattgatggcgactctttgctgttg
gagcttctttgccaaagtagcctggactggcaacatggcggacagtttctgcatctcacc
tatctacttgaacgattcctccagtattttaaagataaaggtggtgttttccacgttgtc
tttttcaaagaagtggagatcatctggaaaagtcgaccatccatgctgttggcacgacaa
gttctaattcttcatcttcagcacaacacgcctttcataactgagacttcaatagcaagt
gtttgggacaagcattggaaagagttcatcgatcgtaatattcccgcatttctggtgtta
actgacgcggaaaatgttccatggaaaaagactggagagaccaaaatgcttgatgagaca
gtggaatttttcttccgatgtcttctgttacactgtcttggacaaggattgaattgtgtc
tttatctcaggcgtccagatgaccgcgacaaaagtgatgggatattacaacgagtccacg
tcagaacatagattattcttcagaaagtatggtaaagcagtccgtgatacgtgggattgg
ttgatggggtattggcgccgtcaatgtactcaggaaaacatcgccggatgtgtagtaaca
gaaaatcagattgatatccagtcggaagttcaagttgctcttcaatctccaccacaaggt
ggatgtcgggaagttgccacaatccttgcttgtgtgcaggtcctcttacttctactgcac
aacgacaacattagtaaggatacgatgaaggctgccgaggataaggtcaaacttttcctt
cttcagtctgcacttcttaagaaacttccgttgaagtacagagctcataccgtaaacagt
tctttgttggacgaattttgcaaagcgaaagatggcaaagtttatccctttcacgaaatc
catacgagtttatggcagattttaagggtgatagaatcagttttgagagatgcttataaa
gacgacagtgccgcgaatgtattagaaatgacttcagtggcagatctaatggacggacgc
ctagtccatactctcttctggcttattatgaaacagatatcccagggatcaaaagacctc
agtctacctcaggatgttaaacgagatgttgagtctgcatgggagaaagttgtcgctctt
gtgaatggatcatgtcattcacattctctagaaagtcaattttttccattgtttgacgga
agttctacaagtcttcatcacgaggaaagaacaaatcctgatcaagtctccggcgcgaag
ctcaaaaggctacttgacgttggaagtgttcttgtgaatgagtatgttggtgatattaga
tcaagaattaacgccatggctggagacgagaccgaagacgaagtgttactgattggcaaa
gaatttgacgagcagtaccactggcattctctcaggccactatctgatgattacgacagg
acaaagcagtcttttacagataagcctccgactgatcccaaagagagaaagtggtatttc
aaacagaagatgaagtacgttcgctaccaaagattttacggaaactctattgttggtggt
gtggacaaagcgaaaattataaccgtcaaggaagaggtcgcaaagaagaaaaaaggaaag
aacaaggatggaaagatgggagaaaaagcgaaacgaatcatcgaacagaacgataaaaaa
cgcaaagacgaagaaagaaaaaaagatcaagaaaaatggaacaactttcttaaagacatt
gacaacaatctgaagaaggataaattcagcactgttttgcagttagtcgataagtatctt
gaagattgcaaaactcccgaacttcatcttcaagcgctgatgaaaaaggcccaaagttgc
cttggagcctggcagcagacaagagctgctgacgctgaatctaatgacatgaaatatcct
gtcctgttactaaagagtgttcagaaaatggctgaagacttccacagccttcttaccgtc
aaagaaaaaaagaaattggctggatttatgcggaagctaggattcgatgacatcgcagcc
acgctttacgatctaccggaagaaagtgaaagaaaagctcaacagctatcggtccacacc
acaagcacaagattccaacttgactgcatgggccatttactcaagcgggaaacaagaact
gatcgtgactcaagggtcgaccacttcattccagatacatggcagcgtgaacttcttgat
gctgtggacaagaacgagtcagcggtaatagtggcacccacctcgtcgggaaagactttt
gcctcatactactgcatggagaaagtgctgactcaagacaatgatggtgtggtggtctat
gtttccccaacaaaggccttagtgaatcaagttgctgctacagtttacgctcgctttcat
cgtaaacagcttccagagggaagggcggtgtatggtgttttcacgagggattatcgattc
aacacgttgaactctcagatccttgttacagttcctcaatgtttggagatactttttctc
tcgcctcgtagacaggattggacaaaaaatgttagatatgtaatcttcgatgaggttcac
tgtcttggtcaagagataggagctgaagtctgggagcatcttcttcttctcattcgctgt
ccctttctggcgctctcggcaaccattggaaatccagatgaccttacaaggtggttgcaa
gccgctcaaaactttcgagagcagcaagacaaacaagaaaattgcccgatgaggaagtcc
tacagaatcagactagttacctttcatgaacgatactcagatctggaaaaaaatgtatac
cttccgagtcctagcaatggtggattttctgaagagtccatggaatacgaaggtgtttac
gatgtcaaagctacaagagagtttgtgagacttcacccttgtgctcagcttggagcaaaa
cagctacaagagaattccttcccaagggatatggatttcacccctcaagaatctctacaa
ctttttgacgtcatggctaagcactggccaaacaaagaatccttgcagaaactttccccc
gagaggtacttcgagaaaaataagttcattgacaagagctgcgcacgacggtacgagaag
gacctgaagagagaattcaagtcttgggccgatgaaaaacatcttgagaaggttcaagcc
gttatacagtcgctgaattcagttttgctggagaaacaggcctcgactgaagaggaatgg
acacagcttggaatggcttcgttgggaaaacttttcatttggagcaatttcccaaagctc
gtggaacagcttaaggctcaaggaaaactgcctgctcttgttttcagctttgaccgcatt
ttttgcgaagagttggcatttggtctcgctcagcactttcgaaaacgagagaagcttatt
aaaggccagaataactggaaagacttgaaacttgccataaagagggtacgaaaggcggaa
aagaaatttaaaaggctgagagatggagaggcagagagtacaaaagaagaaagattgtgc
aggcaagtaggacaacagtatgaaaaagacttttcagtcttaactggtcctataccagag
tgtacattagcctttacacacgaaattggaaacgaggatttacagaagatcatgggtcgc
atttggtctgtgcatggtttctcacaattaaagaatgctttaagacgaggaatcagttac
catcacgctggactgaaaaacagaattcgctgctgcgtggagatgctatttagagagaag
tatcttcaggtcgttacagcaacaggaaccttggcccttggtattcatatgccttgtaaa
acggtcgtatttgctggagattcaccctttttaaactccttacagtacagacagatgtct
ggcagggcaggtcgccgaggttttgaccctgtgggaaatgtagtgttttttggagttcct
ttccgtaaaattcaacgtcttatcacagccaatgttccaaagattgttgggaacttcccc
attaaccacaagatttgtcagccgggaaagaatggaaaattctcagacgacgtgttgaga
aagatggtgctcgttctaagccacttgttcggcagacgataccttcacccttcatacaaa
cgagcggtccatttgtgcccgacgtcaaaagtaattttggaggatcttccagatgaattt
gctacggctctaagagagtacaaccgccaagtcacagatgtctttagtcagtacctcact
acggtggctgcagacctcgaaaaggaaagaggagaggagaacaaactccctttatcgggc
atagaatttccaaagcaagcaagcgttggtgacgatgaaaagtacgatgttatcgaaggg
ctcgtgtcctcatccataccgtactccgcctgctcttccttcgctgcattgtcgggaaat
tcagacatacaattgcattcttcaagcgagaccgcagccagttatccaaaatcacacgaa
agaaatgtcgacgtcgccaaagagaacgcagcagttgagctttatgaagaagatatagaa
gaagaaccaattgatcatctgcttgagattgttcgacgagatgtttacaccgacatccat
gttgttcccatcctccggctgaaaaaatgcaactcagtcggaagtgctatgcccttgaat
gcttatgctctggattttttcaagcacgggtctgccaaagtcattgagaaagaaaacgga
atcaaggccggagaagtttttcaagtgttaaaggattttgtcctaaccatgaagtcaatc
agtacttctctggaagagctgggtcccgagggggataacgtggtggtagctttcaaacag
ctcgccgaggagtatggaaacaagttcagaaagcagtttgatgcggacatttga
DBGET
integrated database retrieval system
