Pocillopora damicornis (lace coral): 113664587
Help
Entry
113664587 CDS
T05773
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113664587
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
113664587
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
TOR1L1_N
HEAT_EF3_N
HEAT_EZ
TPR_Trm732_C
HEAT_MROH2B_C
HEAT_2
Vac14_Fab1_bd
HEAT_GCN1_C
HEAT_GCN1_C_2
ARM_ECM29
HEAT_GCN1
CDC73_C
ARM_TBCD_2nd
Motif
Other DBs
NCBI-GeneID:
113664587
NCBI-ProteinID:
XP_027036012
LinkDB
All DBs
Position
Unknown
AA seq
1927 aa
AA seq
DB search
MATRLERLFLLLDTGSTAVTRKAAAQQLGEVQKLHPHELQNLLNRVHVYLKSSSWETRIA
AGQAIEAIAQNVPLWNPVAVQNIKVEPSERNRSETIKEAVTNELLEFSKFDINRVLKHGE
RLVGSSGAEYDLPEEDLIGLEPKERLNRQQKLLRKRLGLDIAPGIDVGMDKLFDDEDLLV
NTHVTKGKALTKQKSFESAANVVAAEIAAISSSAELSSREKNRAKRKAKMLAKQRSKEAS
KEGESAQGSFNDSVSIDNDQEAEHGSASKKRKTASVIVDQPAESDKMVVDQVTDVMATFE
ESTEWPFENFCQELCQDLFHQTWEVRHGAATGLREIIKVHGQGAGKTLDSSVDDLQIQNK
KWLENMSLLLLCVMALDRFGDFVSDEVVAPVRETCAQTIGVILKHAEAESVKRVMMVLLT
LQAQEEWEVRHGGLLGLKYLMAVRQDLTKDLLPLVLDPIVTALKDDDDDVRAVAASALLP
VAESLVKFAPSYVQEVLVTLWDTLVELDDLTASTNSIMMLLARILSCPSVALQGTEGGDA
SLTELVPRLWPFFRHNIKSVRLAALETLQTLLVGRLQHESHRENLLECVWLMPILQDSLR
HIYQRFILETDVDVLEMVYKVWSVMLERSAKSLLGRVTIPFLNSWLGMMMIPAYTPIDHT
ALVQALHRTQNKGDRHVDRAHMIRGRPLQAQTEPQSEMIAGVTLATGLVQRDLAVLQARL
AASRAIGLLASHYTGCPAGDDVELPPLGFLMQTLQFPLTSNSGIQRMCASLTLADWAGCQ
AECKCPEENIAQLNNILSEQIVYDEIAVLNTRLQTDCQGLLNAFREKGINASAGIQPGCY
TVDSAVKLASDIFMEVSKNISPQALKGAEIKRRHLMATIGQLQSEYQKLHIRVQASVAST
LIFLNKLPIKLNPIIRPIMDSIKKEEQTIMQTRSAKALAKLLELCITREPCPNAKIIKNL
CSFACSDPSVTPAVNISLTVASDEPPLSPIPEGQSESNCNSVSFGGKNASMERGYSLQCD
QYNGILSLVQQLKNANASASKKASSSAGHSKLQPPAVDGVSVASLDDNSMDDSEMAKVLS
IQRRGAEFSLLKLAHHFGSLLPSKLPKLWEAVVGPLQQITNGNSFDPDKLIGLDNEAQNL
INCLQILEVLTPTMHVELLSKILDLLPNIVMCLQHPYRAVRHLAARCLGVLCIVSTEDTM
KLTTIVMLEKVILLKSSPFPSPPTINGDWSISARHFRVKLIFAVFSLYTHMLVSLTGCFT
SGVIDRLGMGAVPYVVLLVVPVLGRMSDQCEDVRLMATYCFATLIRLMPLESGIPDPPSM
FKAMVEQKQKERKFLEQLLDGKKVENYTIPVPIKAELRKYQQDGVNWLAFLNSYKLHGIL
CDDMGLGKTLQSICIIAGDHHAKATVYKETGNSDCKPLPSLVICPPTLTGHWVYEVEKFV
NKDFLKPLHYTGPPSERRRYRIFVILHVLSLLAKVIKQLRASHRLILSGTPIQNNVLELW
SLFDFLMPGFLGSEKQFQSGFGKPILQSRDAKSSSKEQEAGALAMEALHRQVLSFLLRRL
KEDVLQDLPPKIIQDYYCEPSPLQVQLYEDLAKFQVKKGLEETVSHMDEENKNEEASKDN
PHVFQALQYLRKLCNHPLLVLTANHPEYTKLKDQLDQQHVSIRDIQHAAKLVALKQLLMD
RGIGVGSSSPGSTDLCSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMLDIVEN
DLLKKHMPTVTYLRLDGSTPAGSRHSLVQRFNNDPSIDMLLLTTLVGGLGLNLTGADMVI
FVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITWGTLEEKIMGLQKFQLNIANTVISQD
NSSLLTMDTGQLLDLFLVDQEKKREKPSAQQQQWNATGKTSSLKTMIENFGELWDEEQYE
TEYNLDN
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atggctacaagacttgagagactttttctccttcttgacactggctccactgctgtgaca
cggaaagctgcagcccaacagcttggtgaagtgcaaaaattacatcctcacgagctacag
aatcttctgaacagggttcatgtatatctgaagagtagcagttgggagacaaggattgca
gcgggtcaggccattgaggctattgcacagaatgtacctctatggaacccagtagctgtg
caaaacatcaaagttgagccatcagaaagaaataggtcagagacaatcaaggaagcagtt
acaaatgagctactagagttttccaagtttgatatcaatcgtgttttgaaacatggggag
cgtttggttggctcatcaggggctgagtatgaccttcctgaggaagatcttataggcctt
gaaccaaaagagaggctaaacagacagcagaaacttctcagaaagcgccttggcttggat
attgctcctggaattgatgttggaatggacaaattatttgatgatgaggatctcttggtg
aacacccatgtgaccaaggggaaagctttgacgaaacaaaagtccttcgagagtgccgct
aatgtagtagcagctgagatagctgcaattagctcatcagctgagttgagctcaagagaa
aagaacagagccaaacgaaaagcaaaaatgcttgccaagcagagatcaaaggaagcatcc
aaggagggggagtctgctcaagggtcatttaatgacagtgttagtatagataatgaccag
gaagcagaacatggttcagcttccaaaaaacggaagacagccagtgtcattgttgatcag
ccagcagagtctgataagatggttgtggatcaggttactgatgtcatggcaacatttgaa
gagtcaactgagtggccatttgaaaacttttgccaagagctatgccaagatttgttccat
caaacatgggaggtgcgccatggggcagctacaggcctgcgagaaataataaaggttcat
ggacaaggtgctggaaaaactttagattcttccgttgatgatctccagattcaaaataaa
aagtggctggaaaacatgtctcttctccttctttgtgtcatggcacttgatcgttttgga
gattttgtgagtgatgaggttgttgccccagttcgtgaaacttgtgcacagacgatagga
gtgattttaaagcatgctgaagctgagagcgtgaagagggtcatgatggtactgttgaca
ttacaagcacaggaggaatgggaagtgcgtcatggagggcttttgggactcaagtatctg
atggctgtcaggcaggatctgacaaaggatttgttaccactagtgttggatcctatcgta
acagctcttaaagatgatgatgatgatgttcgggcagtagctgcatcagctctgcttccg
gttgcagagtcattagtcaaatttgctcctagttatgtgcaggaagttcttgtgacactg
tgggacacacttgttgagcttgatgacttgacagcttcaactaatagcattatgatgctg
ctggccagaattttgtcctgtccatcagtggctctgcaaggaacagagggtggtgatgct
tccctcacagagctagtgccacggctgtggccctttttccgtcacaatataaagtctgtt
agattagcagcattagaaactcttcaaactctccttgttggaaggctccaacatgagtct
cacagagagaatttattagaatgtgtgtggctaatgccaattctacaagattcattgagg
cacatttaccaaagatttattctggaaactgatgttgatgtcttggagatggtgtacaag
gtgtggagtgtaatgcttgagagatcagctaaaagtcttcttgggagagttacaattcca
ttccttaacagttggcttggaatgatgatgataccggcttacactcctattgaccatact
gctcttgtgcaagctctgcataggactcagaataagggggaccgtcatgtggacagagct
cacatgataagaggccgaccacttcaggctcagactgaacctcaatctgaaatgatagca
ggagtgacactggccaccggcttagtccagcgagaccttgcagttttacaagcacgactg
gcagcatcaagagctattggtctattagcatctcattatactgggtgtccggctggcgat
gatgtagaacttcctcctcttggttttctgatgcaaactttgcagtttcctctcacatca
aactcagggattcagaggatgtgtgcatcattaacattagcagattgggctggctgtcaa
gcggaatgcaagtgtcctgaggaaaatattgcacagttaaacaatattctatcagaacaa
attgtgtatgatgagatagctgtgcttaacacaagactgcaaacagattgtcagggcttg
ttaaatgcattccgagagaaaggaattaatgcctcagctggtatccagccaggctgctat
actgttgacagtgctgttaagctagcctcagatatcttcatggaagtttccaaaaacatt
tcaccacaagctctcaagggtgcagagataaagagaaggcatttaatggcaaccatagga
caattacaatcagaataccaaaagctacatattagagtacaggcaagtgttgcgagcaca
ctgatcttcttgaataaacttcccattaaactgaaccctataataaggcccatcatggac
tctatcaagaaagaagagcaaaccatcatgcagactcgatcagcaaaagcattagctaaa
ctgttggaactatgtataacaagagaaccatgtccaaatgccaagatcattaaaaatctg
tgcagttttgcttgcagtgatccttcagtcactccagcagtaaatatcagtttaacagta
gcttctgatgaacctcctttgtcaccaatccctgaaggacagtcagaatcaaattgtaac
tcagtctcttttggaggaaaaaatgcatctatggaacgagggtacagtttacagtgcgat
cagtacaatgggattctgtctcttgttcagcagctgaagaatgcaaatgcatcagcttct
aaaaaagcaagtagcagtgcaggtcatagcaagcttcaaccacctgctgtggatggggta
tctgtggcctctcttgatgataacagcatggatgattctgagatggctaaagttttaagt
attcaaagaagaggtgcagaattttctctgctcaaattagcacatcattttggaagcttg
ctaccatcaaagttacccaaactgtgggaggcagttgtggggcctttacagcagataaca
aatggaaattcatttgatcctgacaaacttattggtctggataatgaagcccaaaatctg
ataaactgcttacaaattcttgaagtattgacacctacaatgcatgtggaactgttatct
aagattttagatttgctccccaatatagtaatgtgccttcagcacccttacagagcagtg
cgacacttggcagccaggtgcctgggtgtgctgtgcatcgtgtccactgaagataccatg
aagctgacaacaattgttatgctggagaaagttatcctcctaaaatcctcccccttcccc
tcgcccccgacgataaatggtgactggtccatttctgctcgccattttagagtgaagctt
attttcgctgtgttttcactatacacacatatgttggtatccttaactggttgctttaca
tcaggtgtaattgatcggctcggaatgggtgcggtgccttacgttgttctcctggttgtg
cctgtgctcggacggatgagtgaccagtgcgaagatgttcgactcatggccacatactgt
tttgccacacttattaggcttatgcctcttgagtctggtattcctgacccgcccagcatg
ttcaaagctatggtggagcaaaaacagaaggaacgaaaatttctggagcaacttttggac
ggtaaaaaggtggagaattacactattcctgttcctatcaaagctgagctgagaaaatat
caacaggatggtgtcaactggctggcatttctcaacagctacaagctgcatggtattcta
tgcgatgacatgggacttggaaaaactcttcagtctatttgtatcatagcaggtgatcac
catgcaaaagctacagtatacaaggagacaggtaatagtgattgcaaacctttgccttct
ctcgtgatttgcccaccaacactaacaggacattgggtgtacgaggtggagaagtttgtt
aacaaagatttccttaaaccattgcactatacgggcccgccgtctgagagacgaagatat
cgtatttttgttattctccatgtgttatctctgcttgcgaaagtcatcaagcagctacga
gcgagtcatcgacttatactctcgggaacaccaatccagaataatgtcctggagctgtgg
tcattgtttgatttcttaatgcctggttttctcggaagtgaaaagcagtttcagtctggg
tttggtaaacccattctacagagtagagacgcaaaatcgtcttctaaggaacaagaagct
ggggccttggctatggaggcccttcatcgtcaggttttatcattcctattgaggcgcctg
aaagaagatgtgctgcaagatcttccacctaagatcatccaagattactactgtgaaccg
agtccgctacaggttcagttatatgaagacttagccaagtttcaggttaagaaaggtttg
gaggaaacagtttctcacatggatgaagaaaacaaaaacgaggaagcaagcaaagataat
cctcacgttttccaggctcttcagtacctgcgcaagctatgcaaccacccgcttttggtg
ctcactgccaatcatccagaatacactaaacttaaagaccaattagatcaacaacatgtc
tccatccgggacattcagcatgccgccaaacttgttgctctcaagcagctgctgatggat
cgtgggataggagttggctcctcatccccaggctccactgatctatgttcagaccnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcatgttggacatcgttgaaaat
gaccttcttaaaaaacatatgcctacagtgacatacctcagacttgatggaagtacgccc
gcgggctcgcgtcactcgctcgtacaaagatttaacaacgatccctcgatcgacatgcta
ttgttgacgacacttgttggaggactgggattgaatctgactggtgccgacatggtcatc
tttgtagagcacgactggaacccaatgaaggacctacaagccatggaccgagctcatcgt
attggacagaagaaggttgtaaacgtttacagattgataacatggggaacactcgaggaa
aagattatgggactccagaagtttcaactgaacatcgccaacacagtgatctcgcaagac
aactcaagcctattaaccatggatactggacaactcctggatctctttttagtcgaccaa
gaaaagaaaagagaaaaaccaagcgcacaacaacaacagtggaatgcaactgggaagact
tcgtcgctcaaaactatgattgaaaattttggagagctatgggacgaggaacaatatgaa
acagaatacaatttagacaac
DBGET
integrated database retrieval system
