Pocillopora damicornis (lace coral): 113667468
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Entry
113667468 CDS
T05773
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03020
RNA polymerase
pdam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113667468
09124 Replication and repair
03420 Nucleotide excision repair
113667468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113667468
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113667468
Enzymes [BR:
pdam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113667468
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113667468
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113667468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
113667468
NCBI-ProteinID:
XP_027039086
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MYDPEDEVGYGEEEGEEITRDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIV
EDSPEIDLQAESLHMTADTETPPRFLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT
YSAPLYVDITKTMIREDDEPQVTQHSKMFIGKIPIMLRSTYCLLSGLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFSKKDSKYSFTAEIRSCLEHSSRPTSTMWVSM
LAKGSQGGRKSAIGQRIVGSLPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMME
MVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEILQKEMLPHVGVSDFCET
KKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRMYA
QKFIDRGKDFNIELALKPKVITDGLRYSLATGNWGDQKKAHQSRAGVSQVLSRLTFASTL
SHLRRLNSPIGREGKLARPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPS
PILEFLEEWTMENLEEITPSAISNATKIFVNGCWVGIHRDPDQLMSTLRKLRRQMDIIVS
EVSMVRDFREREIRIYTDAGRICRPLLIVENQKLLLKKHHIDQLKEREYNEYSWQDLVAG
GIVEYIDVNEEETVMVAMTPDELVEKGQAYCSTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAI
AAIASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYRDQESKRGMDQEETFEKPTRETCQG
MRNATYDKLDDDGLIAPGTRVSGDDVIVGKTITLPENDDELEGTTRRFSKKDSSTFLRPS
ETGIVDQVMVTINQEGYKFTKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCE
GITPDVIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSQLLNDYG
YHLRGNEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEGRS
RDGGLRFGEMERDCMIAHGAAQFLNERLFEVSDPYSCHVCNLCGLIAIANLRNNTFECRG
CKNKTQVSRIRMPYAAKLLFQELMSMSIAPRMMVCDPVK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacccagaagatgaagttggctatggagaggaggagggagaagaaattactcga
gatttatggcaggaagcttgctggattgtcattagctcgtattttgacgaaaaaggcctt
gttcgacagcagttggattcctttgacgagtttatccagatgtctgtgcaaagaattgtc
gaagactctcctgaaattgatctgcaagcggagtcgcttcacatgactgcagatactgaa
actccaccaagattcttactgaagtttgaacaaatttatctgtcaaaaccaactcactgg
gaaaaagatggtgctccaagtcctatgatgccaaatgaagcaaggctacgcaatctaact
tattcagcccctctttatgttgacatcacaaaaacaatgattagagaagatgacgaacct
caagtcacccaacatagtaaaatgttcattggaaaaataccaatcatgttgcgatccact
tactgcctcttgagtggtttgacagatcgtgacttgacagaacttaatgagtgtcctctt
gaccctggaggctacttcattattaatggatctgaaaaagtgttgattgcccaagagaaa
atggctacaaatacagtatatgtattctccaagaaggattcaaaatattcatttaccgca
gagattagatcatgcttggagcattcttcaagaccaacaagcaccatgtgggtgtccatg
ttagccaagggaagtcaaggaggtcgcaaaagtgctattggccagaggattgttggttct
ttgccatatatcagacaagaaatccccattatgattgtattcagagctctgggttttgtt
gctgatcgggatattctagagcatatcatttatgactttgatgatcctgaaatgatggaa
atggtaaaaccatctttagatgaggcatttgttattcaagaacagaatgtggctttgaac
tttattggttctcgtggtgccaaacctggtgttacaaaggagaggcgtatcaaatatgcc
aaggaaatccttcagaaggaaatgctccctcatgttggtgttagtgatttttgtgaaacc
aagaaagcttacttcctgggatacatggttcataggctactgttggcagcacttggtcgt
agggaactggatgatcgggatcattacgggaataaacggcttgaccttgcagggccactg
cttgcttttctcttccgaggactcttcagaaatctcatgaaagaagtcagaatgtatgcc
cagaagtttattgatagaggaaaggacttcaacatagaactagctctgaaacctaaagtg
atcacagatggtctgagatactctctggccactggaaactggggtgaccagaagaaagct
catcagtcccgtgcaggtgtgtctcaggtactcagtagactgacctttgcctccacatta
tcccacttgcgtcgtctaaactcacccattggtcgagaaggtaagcttgcacgtccacgg
cagctccataacacccattgggggatgatttgcccagcagaaacccctgaaggtcatgct
gttggactggtgaagaacttggctttgatggcttatatttctgttggttcccaaccaagt
cctatcttggagttcttggaggaatggaccatggagaatttggaagaaataaccccatct
gctattagcaatgcaaccaagatttttgtgaatggatgttgggttggaattcatcgagat
ccagatcagctcatgagcacattaaggaagttgaggaggcagatggacatcattgtgtct
gaggtgtcaatggtgagagacttcagagaacgagaaattagaatttacacagatgctggt
aggatttgccgtccgttgttgattgttgaaaaccaaaaattgttgctgaagaaacaccac
atcgatcagttaaaggagagagagtacaatgagtacagctggcaagacttggtggcaggt
ggaattgtagagtatattgatgtaaatgaagaagagacagtgatggtagccatgactcct
gatgaattggtagagaaaggccaggcttactgttcaacatacactcactgtgaaattcat
cctgccatgatcctgggagtgtgtgcctctattattccatttccagatcacaatcagtct
cctcgtaatacctaccagtctgctatgggtaaacaagccatgggtgtgtacatcactaac
ttccatgtgcgtatggacacattggctcatgtgttgtactaccctcagaaacctttggtc
accactcgttctatggagtatctcagattcagagaactgcccgcaggaatcaatgctata
gcagcaattgcatcatacacaggatacaatcaagaagattcagtcatcatgaacgcttca
gctattgatagagggctttacaggtctgtgttttaccgctcataccgagatcaagaatcc
aagagaggaatggaccaagaagaaacgtttgaaaaaccaaccagagagacatgtcaaggt
atgaggaatgcaacttatgataaacttgacgatgatggcctcatagcacctggtactaga
gttagtggtgatgatgtcattgtaggaaagaccatcactctgccagaaaatgatgatgag
ctggaagggacaactcggaggtttagcaagaaagactctagcacattcttgcgtccaagt
gagacagggattgtggatcaggtaatggtcaccatcaaccaggaaggttacaagtttact
aagattaaggttcgctctgttcgtgttcctcaaatcggagacaagtttgccagtcggcat
ggtcagaagggaacttgtggaataacgtatcgtcaagaggacatgccatttacgtgtgaa
gggatcactcctgatgtgataatcaaccctcatgccattcccagccgtatgacaatcggt
cacttgatcgagtgtctacaaggaaaggtgtcagctaacaaaggagagataggtgatgcc
acacccttcaacgacgctgtgaacgtccagaaagtttctcaactgctcaacgactatgga
taccatctgagaggcaatgaggtcttatacaatggctttactgggcgaaagttgaacgcg
caagtattcttgggtccaacgtactatcagcgcttgaagcacatggtggacgataagatc
cactctcgggccagaggtccagtccagattcttactcgacagcctatggagggacgatca
cgtgacggtggtctccgtttcggtgagatggaacgtgactgtatgattgcacacggcgct
gcacagttcctgaatgaacgactgtttgaagtgtctgatccatatagctgtcacgtgtgt
aacttgtgtggattgatcgcgatagcgaacttgcgcaataacacctttgaatgtagaggt
tgtaagaacaagacgcaggtgtcccgtattcgtatgccctacgcggcaaagcttcttttc
caagagcttatgtccatgagcattgctcccagaatgatggtgtgtgatccagttaaatga
DBGET
integrated database retrieval system
