Pocillopora damicornis (lace coral): 113667817
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Entry
113667817 CDS
T05773
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A-like
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113667817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdam03032
]
113667817
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113667817
DNA replication proteins [BR:
pdam03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
113667817
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113667817
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
TopBP1_BRCT0
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
113667817
NCBI-ProteinID:
XP_027039476
LinkDB
All DBs
Position
Unknown
AA seq
1577 aa
AA seq
DB search
MASDDENTLRFISVNESMEENLLRALEASKEYDLNSEWISASNLENIDLEIHRSVYILEN
FEGQSFEYLKERNCRIVGPPCILSCLQTETPLPNVQYPVYCVAMRGIAISCTSVPREERD
RLYDLIRLMGGIVMKDFTSAVTHLVAGEVGSKKYKVACSFNKPILLPQWVYKCWELSQDE
HVCATDEQFMEFKCPTFKGITLCVTGIDAEKRKEIKKLVTQHGGTYSGALDMNTCTHLLV
DDPRGEKYEYARRWNLHCVCTQWFYDSVQTGLCLDESSYYTQPDKENNSSQAGARLSGSL
IKGSTSKSGTEMKVSNKAAQAAYKSAQKHGNKDLIPSSGRNSMQSNQSKALENVSKIGET
HISDPDGSEFDVRVQPGNMFLDGCKIYLSGFSGHKLEKLRKIINSGGGTRFNQINEIVSH
VVVGNRINADIDLLRNCDFQAFVVSVQWILDSAKEGKKLPEETYLLSDLLQREDLSPSCK
ENEDPDEAVSKAAESVSVLQPNASEENHKDTKAKPEEDQCDGNDDYDDVFLQYLPQSEEK
GNEPVHNLPQGDTSAQFKEHSSLSADPDATLDDEEEEAFQEGLLSGKYFTVAGFSSEQLT
HLWHLIEGNGGKAVASGQTADYAVLPMNTVLEEDLHAKQLVTFCWLEKSLECGHLLALEG
GFLFKPFSIPDAGKPLSRCVLSISQFTGVERDHLYQLAELLGAHCQEYFVRKESGNYKAS
THLMCQYPDGNKYKAAIKWNIPVVSRDWLFACASDGTLVPFDKYPVSIDKKLAMDVIDPC
PPEKLRADTTQLSNLKPDEVELPMETTDDTSVPHAQKAYSGSGGSTEKQPVKRPSMYFRP
FRPSFDLADVMEELASPACPSLRGRKSRGSRNSFPLDDLFAENIKQTLQKLGPVAPSTRE
SDDGNDNDETFDNVQQEGEENGEPQQQGILVGVILSVSKKLAQQQTELFALASSLGADYR
RLYDGSCTHLIHQGPSNDKTKEYTQAKDRGIHIVSPHWLYSCQEKNERVDETMYPHTFNP
KLSLPVVTTGRRMTRSSRAAATEQEMSPLKKRKSLATKMSQSSETEKLSKTGSVPEELAR
EEQAVEGDIAEEVQQDPQMGPATLESLEAREDFKRQLEAIMDATKVKGRRRSRRHTSSNN
SSSVSHNSTGNVTSEMSLATKRTSSRLRSRVGSKSNEGDNSNSSSRVKSRLPATDDSEHS
QSDTITYDDPAGRMEREKIMAQLKRGCSPSPDTHTEDEEEHRPCSNTNTESTVMGVTHTD
ANNAAERHVREMNVTIKSDPPTPVTSSTPAALPIGLQIKDTHKPQPVNLLDTTALDQTQP
RALSTPKFQLSVMTPQEKIDYSALIEQLGGQVFDTVYFNPECTHVVVGKPNRNEKYLAAV
AAGKWVLHKSFLEASREAGFFIEESLHEWGQEIPGEPHNKLAAAARRWRVKLRQERAAAA
EAGKSPSSCGAFNSWVVLLCVDKSRQPGFKRLLESGGAKVSGCRPPFKNTSDFTHAFVDL
AKTKVDSSDLNALQKDNVWCLKPDYIAEYLMQDPPPPPQKYLLSEPVIPGEQDRSVPGQS
RKRKGDDLTGGDKRVRV
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgatgatgaaaatactcttaggtttataagtgttaatgagtcgatggaggaa
aacctattacgagctttggaagctagtaaggaatacgatttgaacagcgaatggatttcc
gcgagcaatttggaaaatattgatttggagatacatcgctcggtgtacattttggagaat
tttgaaggacaaagtttcgagtacttgaaggaaagaaattgcaggatcgtcggtccaccg
tgtatattatcgtgtttacaaacagagactccgctgccaaatgtccagtacccagtttat
tgtgtagccatgcgaggcattgccatcagttgtactagtgttcctcgggaagagagagat
aggctttacgatcttatccggctgatgggagggattgttatgaaagacttcaccagcgca
gtaactcacctggttgcgggtgaggtgggatctaagaagtacaaggttgcatgtagtttc
aataaaccaattttattaccacagtgggtttacaaatgctgggagcttagtcaggacgaa
catgtgtgtgccacagatgaacaattcatggaattcaaatgcccaacattcaagggaatt
actctctgtgtgacaggtattgatgcagaaaaaagaaaagaaataaagaaacttgtgaca
caacatggcggaacgtactcaggagcacttgatatgaacacttgtacccatttacttgtc
gatgacccaaggggtgaaaaatatgagtatgcaagaaggtggaatcttcactgtgtttgt
acacaatggttttatgactcagttcagacaggcttgtgtctggatgagtcaagctattac
actcaacctgataaagaaaataacagttcacaagcaggtgcaagattgtcaggtagctta
atcaaaggcagtacttctaaaagtggcacagagatgaaggtatcaaataaagctgcacaa
gcagcatacaagagtgcacagaaacatggtaacaaagatttgatccctagttccggaaga
aacagtatgcaatctaatcagtctaaggctttggaaaatgtttccaagataggagagact
cacatttctgacccagatggctctgaatttgatgttagagttcagcctgggaatatgttt
ctggatggttgcaaaatttatttaagtggattttctgggcataagttggagaagcttaga
aagatcatcaactctggaggagggacaagattcaatcagatcaatgagattgtatcgcat
gttgttgttggaaatagaatcaatgcagatattgatttgttgagaaactgtgattttcaa
gcttttgttgttagtgttcaatggattttggattctgcaaaggaagggaaaaagctacca
gaggaaacttatcttctctcagatctattacaaagggaagatctttcaccatcatgcaaa
gagaacgaggatcctgatgaagccgtttcaaaagcagcagaaagtgtctctgttcttcag
ccaaatgcatcagaggaaaatcataaggacacaaaggccaagccagaggaggatcagtgt
gatggcaatgatgattatgatgatgttttcttacaatatctgcctcagagtgaagagaaa
ggcaatgaacctgtgcacaaccttcctcaaggagacactagtgcacagttcaaagagcac
agtagtctaagtgctgatcctgatgctacacttgatgacgaagaagaagaagctttccaa
gaaggattactgtctggaaagtacttcacagtggctggtttttccagtgaacagctgaca
cacctctggcatcttatagagggcaatggaggaaaggctgttgccagtggacaaacagct
gactatgcagtgttgccaatgaacacagttcttgaggaagatttacatgcaaaacagcta
gttacattttgctggttagagaagagcttggaatgtggccatcttttggccctggagggt
ggctttctctttaagccattcagcatcccagatgctggaaaaccactcagtagatgtgtt
ttgtcaatcagtcagtttacaggagtagaaagagaccacttgtatcaactagcagaactt
ctgggtgctcattgtcaggaatactttgttcgtaaagagagtgggaactacaaggctagc
acacatctcatgtgccaatatcctgatggaaacaaatacaaagcagctataaaatggaat
atccctgtagtaagtagagattggctatttgcctgtgcctcagatggcaccttggttccc
ttcgacaagtatcctgtcagcattgataaaaaattggcaatggatgtcattgatccttgc
ccaccagagaaactgagagcagacacaactcaactctcgaatttaaaaccggacgaagtt
gaacttccaatggaaacaactgatgacacatctgtccctcatgcacaaaaggcttacagt
ggctctggtggaagtactgaaaagcagcctgtgaagaggccatctatgtacttccgtcct
ttcagaccttcatttgacttggctgatgtgatggaagagctggcttcaccagcttgtcct
agcctaagaggtagaaagagtcggggtagtagaaacagctttccactggatgatttattt
gcagagaacatcaaacagactcttcaaaaactgggccctgttgctccaagcacaagggaa
agtgatgacgggaatgacaatgatgaaacttttgacaatgtccaacaggaaggagaggaa
aatggagaacctcaacaacaaggtattctcgttggtgtcattttatctgtgagtaaaaag
ttggctcagcaacaaacagaactcttcgccttggcatcatctcttggagctgattatcgc
aggctttatgatggatcatgcactcaccttattcaccagggtccatccaatgacaaaact
aaggaatatacacaggcaaaggatcgtggcattcacatagtgtctcctcattggctgtac
agttgtcaagaaaaaaacgagcgagttgatgagaccatgtatccacacacctttaatcca
aagttaagtctgcctgtggtgacaacgggaagacgaatgacaaggtcatctcgagctgca
gcaacggaacaagagatgtcaccactaaagaaacgaaagtcactcgcaacaaagatgagt
cagtcgagtgaaactgaaaaactgagcaagacgggaagtgtgcctgaggagttagcaagg
gaggaacaggctgtggaaggcgatattgcagaagaggttcaacaagatcctcaaatggga
ccggctacacttgagtctctagaggccagagaagattttaaacgtcagctggaggcgatc
atggatgctaccaaggtaaaagggagacgaagaagccggcgtcatacgtcatccaacaac
tcaagcagcgtttcccacaattcaacaggaaatgtaacatctgagatgtctttggccacg
aaacgtacatcatcaaggctgcgatcacgtgttggttctaagtctaatgaaggtgataac
agcaattcatcctcacgggtcaagtcccgtttgccagcaaccgatgacagtgaacactcg
caaagtgatactatcacttatgacgatcccgcgggacggatggagcgtgagaagataatg
gcacagctcaagaggggctgcagccccagccctgacacccacacggaggacgaggaggaa
cacagaccgtgcagcaatacaaacacggagtccacagtcatgggggtcacgcacaccgac
gcgaacaacgcagctgaacgtcacgtaagagaaatgaacgtaacaattaagtctgaccct
cccacacctgtcaccagttccacaccagcagctctgccaatcggcctacaaatcaaagac
acccacaaaccccagcctgtgaatcttctggacaccacggcacttgatcaaacacaacca
cgtgctctgtctacgcccaagttccagctgtcggttatgacgcctcaggagaagatagat
tactcagcacttattgagcagctcggaggacaagtgtttgacacggtttattttaatcct
gagtgcacgcatgtggtggttggtaaaccaaacaggaatgaaaagtaccttgctgcagtg
gccgctgggaagtgggttctgcacaagtcgttcttggaagccagtcgggaagctggcttc
tttattgaagagtctctccacgaatggggacaggaaatccctggagaacctcacaataaa
cttgctgctgctgctcgacggtggagagtcaaacttcgccaggaaagagcggccgctgcc
gaagctggtaaaagtccatcgtcctgcggtgcattcaatagttgggtggttcttctgtgc
gtggacaagtcacggcagccaggatttaaacgtctgttagaatccggaggggctaaggtc
tcgggatgcaggccaccgttcaagaatactagcgacttcacgcacgcatttgtagactta
gctaaaacgaaagtggattcttctgacctgaacgctcttcaaaaggataatgtttggtgt
ttgaagccagattacatcgccgagtatctaatgcaggatccaccacctccccctcagaag
tacttactctcagaaccagttatacctggtgaacaagacagatcggttcctgggcagtca
agaaagagaaagggggatgatctcactggaggcgataaaagagttcgtgtttaa
DBGET
integrated database retrieval system
