Pocillopora damicornis (lace coral): 113668179
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Entry
113668179 CDS
T05773
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pdam04054
]
113668179
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113668179
Pattern recognition receptors [BR:
pdam04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
113668179
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
CARD_2
Yippee-Mis18
AAA_25
FeeM
Motif
Other DBs
NCBI-GeneID:
113668179
NCBI-ProteinID:
XP_027039857
LinkDB
All DBs
Position
Unknown
AA seq
1172 aa
AA seq
DB search
MRPYEKKILEERLKDFMEEVIPGDLLPYLSCLQQTDKEAIEATQSNKGPTTANQTLVDRL
KRRDKGFSEFVRALRKCGSEHTALLLDPYYNYPIDAGDDEVAVSEGSGVGYKKIGTAIDV
SFRGILSLETSADEEQTESGSDLEEYLAGLFGKQSSEESKRMRRDLQKHLPQGAVFVNTA
KGSIIATFRLSTVEAAKKLWEMYSKQTFQDKLKEVLVESTLKRHQKLPDKPLQLNITFSE
DRFKQIQKKLKEIEEEQERDEQMRNTLSSKQEGSAAEDDGSLSEIDRDEIDEIVIPPVYL
GSNANSFNIRELELREYQKELAAPALKGKNTIICAPTNSGKTYVALEIAKKHLEFFTQDN
EATDSSNRKQPKVVFIVSTVNLVSQQKERFEAYLGDKYPVIDISGANATEVPLKYLLQSH
SIVVLTAQMLVNALNNKSKEEQVNLQDISLLLFDECHHAHKEHSYNRIMERYLAFKKQPR
HQGPLPQVVGFTASLGTGKAKSVEKAAEHIILLSANLDAEVISTVQDNKSELAQYANVPE
RKVFQVPTSEKDPFEKIVSQIMTKIETRVKGIKGKLLKSVPPEEKGSQQYRQWVEEFYKD
SVTDADRILITLAEHLREYHIALTINKSTTMKNARKCLQKYFDSLDREKFLQIDEKLTNL
FQAAMSMLDKHVKEHGEPPNPLLMKLKDLLLQHYKDERPQKGEKEEQLRANGIENGGENE
RHDEGSATEISEVGEDVDDSEKSKKTRSSNQENDKTCDDSQEEDKNEGTSLDKTTHNEEE
SGGNKNGDSAKEDLGNIDAADVDDAAEECESGTATENNHENPSQETDKSAENLQDDKSLN
KRNGEQREWKGPKGIVFTRTRESTTALEDWIKEDDELNAVLRPEALVGSGDGNIGMTQNE
QERVISRFHKGETNLLLATSVAEEGLDIMDCNFVIRYDMMGNEISTVQSRGRVRAEVGMY
SVLVSGDSGALKREYTNQFRESLMIEALSKVQKMSPKAFQSKVKAIQDRNFLDRKLKKRV
MALKHSEPVPDDVTFHCRRCFAEVCQAHNIRRVKETYHVIISSDVRDSKVVMEEHHNPKA
LDGVEMNRKIYCKECREDWGVTVLINGMEWMCIKISGFVLQFPEPKARRLTVKKWKLLPF
TIQEATFEELMQQAQQQEPKDDLDDEFSLLFD
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgagaccctacgaaaaaaagattctagaggaacgtctgaaagattttatggaagaagtc
ataccaggtgatttgcttccatatttgtcttgtttacagcagacagataaagaagctatc
gaggcgacacagagcaacaagggaccaacaacggcgaatcaaactcttgtcgatcggctt
aaaagacgggacaaaggtttttcggagtttgtacgagccctgagaaaatgtggaagcgaa
cacactgctttgttgttggacccgtactacaactatccaattgacgcaggggatgatgaa
gtcgctgtctcagagggctcaggagttggttacaaaaagattggaacagcaattgatgtt
tccttcagaggaattctatcattagaaaccagtgcggacgaggaacaaaccgagagcggt
tccgatctggaggagtatttggctggccttttcgggaaacaatcgtctgaagaaagcaaa
agaatgcgacgagacctacaaaaacatcttcctcaaggagctgtttttgttaacactgct
aaaggttccatcattgcaactttccgcttgtcaacggtggaggcagccaagaaattgtgg
gaaatgtacagtaaacaaacatttcaggacaaattaaaagaggtcctggtggaaagcact
ctgaaaagacaccaaaagctcccagacaagccgctccaactaaatataacgtttagcgaa
gatcggtttaaacaaattcaaaagaaactcaaagagatcgaggaagagcaggaaagagat
gaacaaatgcgcaacactttgtcgagcaaacaagaaggcagtgctgctgaagatgatgga
tctctctctgaaatagacagagacgaaatagacgaaatcgtcattccacctgtttacttg
ggaagcaatgccaactcttttaacattcgtgagctggagcttagagaataccagaaggaa
ttggcagctccagcattgaaaggcaaaaacaccatcatctgcgccccaaccaacagtggg
aagacgtatgtggccctagaaatagctaaaaaacacctagagtttttcacacaggacaat
gaagccacagacagcagtaatagaaaacagccgaaagtggtcttcattgtgagcacagtg
aacctcgtttctcagcaaaaggagcgtttcgaagcgtacctgggagacaaataccccgtg
attgacatttctggtgcaaacgctactgaggtccccctgaagtatcttctacaaagccat
agcatcgttgtcttgacagcacagatgcttgtcaacgctctgaacaataaaagtaaagag
gagcaagtgaatctccaggacataagtcttctgctttttgacgagtgtcaccatgcacac
aaggagcactcctacaacagaatcatggaaaggtatctggcctttaaaaaacagccgcga
catcaaggccccttgccacaggttgttggtttcactgcctcacttggtacaggaaaagcc
aagagcgtcgaaaaggcggcagaacacattattctcctttcagccaacctagacgcggaa
gttatttcaacggtgcaagataataaatcagagcttgcacagtacgcaaatgttccagag
agaaaagttttccaagttcccacgtcagaaaaagatccatttgaaaagattgtttctcag
atcatgactaaaatcgaaactagagttaaaggaattaaaggaaagctcttaaagtctgtt
ccaccggaagaaaagggaagtcagcagtatcgtcaatgggtggaagagttttacaaagac
tctgttacagatgcagaccggatccttataacgcttgcagaacatctccgcgagtaccac
attgccttgactataaacaaaagcacaaccatgaaaaatgccaggaaatgccttcaaaaa
tattttgattctttggatagagagaagttcctacagattgacgaaaagttgacaaatctc
tttcaagctgctatgagcatgttggataagcacgtgaaagaacatggtgaacccccaaat
cctcttttgatgaaactaaaagatttgctcttgcaacactataaagacgaaaggcctcag
aagggggagaaagaagaacaactcagagctaacgggattgagaatggcggagaaaatgaa
cgtcacgatgaaggttcagctacagagatatcagaagtaggagaagatgtcgatgattct
gaaaagtctaaaaaaacaagatccagcaaccaagagaatgataagacttgcgatgacagt
caggaagaggataaaaatgaagggacatcactagataaaacaacacacaatgaagaagaa
agtggtggaaacaagaatggagactctgcaaaggaagaccttggtaatattgacgctgct
gatgttgatgacgcggcggaagaatgtgaatctggaacagctacagaaaacaaccatgaa
aaccctagccaagagactgacaaatcagcggaaaacttgcaagacgataagtcattaaat
aaaagaaatggtgagcagagagagtggaaaggtcccaaaggcattgtctttacaagaaca
agagaatccacgacagctctggaagattggatcaaggaagacgatgaactgaatgctgtc
ctcaggccagaggctcttgtgggcagtggagatggcaacatcggcatgactcagaatgag
caagagcgagtgatcagtcgatttcacaaaggagaaacgaaccttctccttgcaacaagt
gtggcagaggaaggtctggacatcatggattgtaattttgtgatccgttatgatatgatg
ggcaacgagatttccactgtgcagtcacgtggccgtgtcagggcggaagtgggtatgtat
agcgtgctcgtgagtggggattctggagcattaaaacgagaatatacaaaccaatttcgg
gaatccctcatgattgaagccctcagcaaggtgcaaaaaatgtctccaaaagcctttcag
agtaaggtgaaagctatacaggataggaactttctggatcgcaagttgaaaaagcgcgtg
atggcgttgaaacattcagagcctgtgcctgacgatgtcaccttccattgccgaaggtgc
tttgcagaagtttgtcaagcgcataacatacggcgcgttaaagaaacctatcacgtgatt
ataagtagcgacgtacgggactccaaggtggtcatggaggaacatcacaaccctaaggct
cttgatggcgtcgaaatgaacaggaaaatatattgtaaagagtgcagggaagactggggt
gtcacagttcttatcaatggcatggagtggatgtgcatcaagatttccggcttcgttctc
caatttccagagcctaaggctcgaaggttgacggtgaagaagtggaaacttctccctttc
acaatacaagaggccacttttgaagagctcatgcaacaagctcaacaacaagaaccaaaa
gatgacttggacgatgaattcagcctgttgtttgattga
DBGET
integrated database retrieval system
