KEGG   Pocillopora damicornis (lace coral): 113668756
Entry
113668756         CDS       T05773                                 
Name
(RefSeq) replication factor C subunit 4-like
  KO
K10755  replication factor C subunit 2/4
Organism
pdam  Pocillopora damicornis (lace coral)
Pathway
pdam03030  DNA replication
pdam03410  Base excision repair
pdam03420  Nucleotide excision repair
pdam03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pdam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113668756
   03410 Base excision repair
    113668756
   03420 Nucleotide excision repair
    113668756
   03430 Mismatch repair
    113668756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pdam03032]
    113668756
   03036 Chromosome and associated proteins [BR:pdam03036]
    113668756
   03400 DNA repair and recombination proteins [BR:pdam03400]
    113668756
DNA replication proteins [BR:pdam03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    113668756
  DNA Replication Termination Factors
   ELG1-RFC complex
    113668756
Chromosome and associated proteins [BR:pdam03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    113668756
DNA repair and recombination proteins [BR:pdam03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     113668756
  Check point factors
   HRAD17(Rad24)-RFC complex
    113668756
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_22 AAA_assoc_2 AAA_11 AAA_16 DNA_pol3_delta AAA_14 Gp44_lid AAA_24 AAA_28 Mg_chelatase RuvB_N AAA_30 DUF815 SLFN-g3_helicase IstB_IS21 ResIII AAA_19 AAA_23 bpMoxR AAA_5 AAA_3 AAA_2 RNA_helicase ATPase_2 AAA_7 T2SSE TIP49_C Viral_helicase1 Hydantoinase_B
Other DBs
NCBI-GeneID: 113668756
NCBI-ProteinID: XP_027040506
LinkDB
Position
Unknown
AA seq 363 aa
MDAFLRGQSSTASSSKLKQQTGEETAGSSNKRVVVPWVEKYRPRSVDEVAYQDEVVSVLK
KSLEGADLPNLLFYGPPGTGKTSTILAIARQLFGPELMRSRVLELNASDERGIQVVRDKV
KKFAQLAASGIRTDGTPCPPFKLVILDEADSMTPSAQAALRRTMEKETKTTRFCLICNYV
SRIIEPLTSRCSKFRFKPLSTDTLEKRLNMICEKENVKCDKKAIQELIKISEGDMRKAIT
YLQSAQRLKGEDVVEADDISEIAGVVPSKMADKLFEACGSDSFEKLDATVQEIIAEGHAA
AQVINQVHDRIIEMADLNDHQKSAIMEKIAIVDKCLCDGADEYLQILSLCSVMMQQFCHA
GQT
NT seq 1092 nt   +upstreamnt  +downstreamnt
atggatgctttcttacgaggacagagttctactgctagttcttcgaagcttaagcaacaa
acaggcgaagaaacagcaggatcttcaaacaaaagggttgttgttccttgggttgaaaaa
tatcgcccaagatctgtggatgaagttgcttatcaagatgaagttgtgtcagtgttgaaa
aaatctctagaaggagctgatctcccaaacttgttgttttatggccctcctggcacagga
aaaacatccacaatacttgctattgcaagacagctgtttggacctgagcttatgagatca
cgggtgcttgaattaaatgcatcagatgaacgtggaatacaggtagtgagagataaagtt
aagaagtttgctcaactggcagcctctggtattcgaactgatggtaccccatgcccaccc
ttcaagctggttattttggatgaagcagattccatgacaccaagtgctcaggcagccttg
agaagaaccatggagaaggagacaaaaaccacaagattttgtcttatttgtaactatgtg
agcagaattattgagcccctgacttcccgttgttccaaatttcgttttaagccattatct
acagatactttagagaagagactcaacatgatttgtgaaaaggaaaatgtgaaatgtgat
aaaaaggcgatacaagaattgataaagatatcagaaggtgacatgaggaaggctataaca
tacctacaaagtgctcaaagactgaagggtgaagacgtggtagaagctgatgatatcagt
gaaatagctggggttgttccaagtaaaatggcagacaaactttttgaggcttgtggatca
gactcatttgaaaaacttgacgctacagttcaggaaataatagctgagggtcatgcagct
gctcaggtcatcaaccaggttcatgacagaattattgaaatggctgacttaaacgaccat
caaaaatctgccattatggaaaaaatagctatcgtcgacaaatgtctttgtgatggagct
gatgaatatttgcaaattttaagcttgtgttccgtcatgatgcaacagttttgccatgcc
ggacaaacatga

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