Pocillopora damicornis (lace coral): 113668841
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Entry
113668841 CDS
T05773
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113668841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113668841
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113668841
mRNA degradation factors
5'-3' decay
Decapping complex
113668841
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
113668841
NCBI-ProteinID:
XP_027040598
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MADPLFGFSSEIPAFEDEALSELDPSLTNLAEGDEYDQLNDDTFGDGALEDDWEFGHRKL
AGLPVEDEASERAQFDEWLKKKGLGSTGDGPEAKFVGRNIEEDFEDELDREEEILEQNLT
KLVDDDDGDSIPVPKTSSKYKDIKYPSGTNPAWDGTSPLSSPTSTTSLHDLISPSSNIWG
SPKLDKENTNKGPANTQSPLTELLKAEGKKKHVQRRPFSPAFEDDSIVQAVPRQTLVPPS
RFTTKPHPVNAIKLEDLEKELTTGREGAPQQVPDAVRQTPHNSMIGRPPPGIPRPMMTPP
GFSSPAPRMSTPRMPPQMFQQRPSPSKHPMPSMSGMTGMPRMPGMPSMPGMPGASPHLMR
TPRTPHYPRHPFPIVHSDPGHLMMRGGMMNFPMSPHHQRFSSPQFPNRRFQDPRQNYQRH
QYDGRMSNDNRSPRQQDRGEHHHQFTDLEKKIHSILTAAESGPNRFDPYAGLMTRREKEW
LIKIQLLQLTSNEPELDDYYFQTYTRRKAAKERAKQSEGVQHDVEDNRASRAPRNMALPQ
FEREKKSYTPLDFQGSLGKVSSSSVQHPRQMVDLMHLSKAYEQEKQGSSAPLKDTKRRSQ
LLLNIEKSYDYLLNIESLEKRLIHVEEKERNELYEARQSNVKKLFDLLNLSTEGSSKDDD
ELFVQFISVHKGKRLLSRALPLFSTVQMEAVLMAIARNILALIKRDNTEPSLQHLMVPLN
RASELASPTVVIQCLKDIVSTPGISVSQGSSLSAVLLNQFGVGLLSILLGRAVVISNSLT
ESDDEMLKSWLNIVSQVASKFQDIPVKQLGRNLEAADRLVALLSTCTDVQTKALLQEHLR
LAASA
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccactgttcggtttcagttctgagattccggcgtttgaagacgaagcattg
tctgaattggacccatcgctgacgaatctcgcagaaggagatgaatatgatcaactaaac
gacgacacatttggtgacggagcattggaagatgattgggaatttggtcacagaaaacta
gcaggtttgccagtagaagatgaagcttcagaaagagcccaatttgatgagtggcttaag
aaaaaggggcttggatcaacaggtgacggtcctgaggcaaagtttgtaggaagaaacata
gaggaagattttgaggatgagctggatcgagaggaggaaattcttgagcagaacttgaca
aaactggtagatgatgatgatggtgactctatccctgtacctaaaacttcttccaagtat
aaggacatcaagtacccatcaggcacgaatccagcttgggatggcacatcacctctctca
agtccaacttcaactacttccttacatgatctgatctctccatcttcaaatatttgggga
tcacctaaacttgacaaggaaaacaccaacaaaggaccagctaatactcagtcaccattg
acagagctgcttaaggcagagggcaaaaagaaacatgtgcagagaaggcctttttcacca
gcctttgaggacgactcaattgtccaggctgtgcctcgccaaactctggtaccaccaagt
cgtttcacaacaaagcctcatccagttaatgctatcaaattagaagatctggaaaaggaa
ctcacaacaggtcgtgaaggtgcccctcagcaagttccagatgcagttcggcaaacacct
cataattccatgataggacgaccacctcctggcattcctaggccaatgatgacaccccca
ggtttctcttctccagcaccaaggatgagtaccccacggatgcctccccagatgttccaa
caaagacctagtccatcaaagcatccaatgccaagtatgtctggaatgactggaatgcct
agaatgcctggcatgcccagtatgcctggtatgccaggcgcaagccctcacttgatgagg
acaccgagaacaccacattatccaagacatccatttcccatagtccactcagatcctggt
cacctgatgatgaggggaggtatgatgaatttcccaatgagtccacatcaccaaaggttc
agtagccctcagtttccaaacagaagatttcaggacccaagacagaactatcaaaggcac
cagtatgatggcagaatgtcaaatgataatcgctcacccagacagcaggacagaggggaa
caccatcaccagtttactgatttagagaagaaaattcacagtattttgacagcagctgaa
agcggcccgaaccgatttgatccctacgctggtctaatgacaagacgagagaaagagtgg
ttgatcaagattcagcttcttcagctcactagcaatgaaccagaactagatgattactat
tttcagacatacaccagacggaaggctgcaaaggaacgagcaaagcaaagtgagggtgta
cagcatgatgttgaagataacagggcaagtagagcgccaagaaatatggccttacctcag
tttgaacgagagaaaaagagctacaccccattggactttcaaggttctttagggaaggtt
tcttcatcatctgtgcagcatccaagacaaatggtggatctaatgcacctcagtaaagca
tatgaacaggaaaagcaaggaagttcagctcctttgaaggacacgaagcgacgcagccag
ctcttacttaacattgaaaagagttacgattaccttttgaacattgaaagcttagaaaaa
aggttaattcatgtggaagaaaaagaaaggaatgaactctatgaagccaggcaaagcaat
gtgaagaagctgttcgatctcttaaacctttctacggaaggttcctcaaaggatgatgac
gaactctttgtgcagttcatatcagtccataaaggaaaacgtcttctcagtagagctcta
cccttatttagcacggttcaaatggaagctgtgttgatggcaattgctaggaatattttg
gcactaataaaaagagacaacactgaaccgagcttgcaacatttaatggttcctcttaat
cgagcttctgaactggcatctcctacagtggtaattcagtgtcttaaggacatagtgtct
acacctggtatctccgtctcacaagggtcatcacttagtgcagttcttctcaatcagttt
ggcgtaggactcctgagcatactgctagggagagcagttgtgatttcgaacagtctcact
gaatcagatgatgagatgctgaaatcttggttgaacattgtttctcaagttgcaagcaag
tttcaggacataccagtaaaacagctgggaagaaaccttgaagccgccgacagattagtc
gcgctattgtcaacctgtactgatgtacagactaaagctttattacaggaacacttaaga
ttggcggcttctgcttag
DBGET
integrated database retrieval system