KEGG   Pocillopora damicornis (lace coral): 113668841
Entry
113668841         CDS       T05773                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
pdam  Pocillopora damicornis (lace coral)
Pathway
pdam03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdam00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    113668841
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdam03019]
    113668841
Messenger RNA biogenesis [BR:pdam03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     113668841
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     113668841
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 113668841
NCBI-ProteinID: XP_027040598
LinkDB
Position
Unknown
AA seq 845 aa
MADPLFGFSSEIPAFEDEALSELDPSLTNLAEGDEYDQLNDDTFGDGALEDDWEFGHRKL
AGLPVEDEASERAQFDEWLKKKGLGSTGDGPEAKFVGRNIEEDFEDELDREEEILEQNLT
KLVDDDDGDSIPVPKTSSKYKDIKYPSGTNPAWDGTSPLSSPTSTTSLHDLISPSSNIWG
SPKLDKENTNKGPANTQSPLTELLKAEGKKKHVQRRPFSPAFEDDSIVQAVPRQTLVPPS
RFTTKPHPVNAIKLEDLEKELTTGREGAPQQVPDAVRQTPHNSMIGRPPPGIPRPMMTPP
GFSSPAPRMSTPRMPPQMFQQRPSPSKHPMPSMSGMTGMPRMPGMPSMPGMPGASPHLMR
TPRTPHYPRHPFPIVHSDPGHLMMRGGMMNFPMSPHHQRFSSPQFPNRRFQDPRQNYQRH
QYDGRMSNDNRSPRQQDRGEHHHQFTDLEKKIHSILTAAESGPNRFDPYAGLMTRREKEW
LIKIQLLQLTSNEPELDDYYFQTYTRRKAAKERAKQSEGVQHDVEDNRASRAPRNMALPQ
FEREKKSYTPLDFQGSLGKVSSSSVQHPRQMVDLMHLSKAYEQEKQGSSAPLKDTKRRSQ
LLLNIEKSYDYLLNIESLEKRLIHVEEKERNELYEARQSNVKKLFDLLNLSTEGSSKDDD
ELFVQFISVHKGKRLLSRALPLFSTVQMEAVLMAIARNILALIKRDNTEPSLQHLMVPLN
RASELASPTVVIQCLKDIVSTPGISVSQGSSLSAVLLNQFGVGLLSILLGRAVVISNSLT
ESDDEMLKSWLNIVSQVASKFQDIPVKQLGRNLEAADRLVALLSTCTDVQTKALLQEHLR
LAASA
NT seq 2538 nt   +upstreamnt  +downstreamnt
atggcggacccactgttcggtttcagttctgagattccggcgtttgaagacgaagcattg
tctgaattggacccatcgctgacgaatctcgcagaaggagatgaatatgatcaactaaac
gacgacacatttggtgacggagcattggaagatgattgggaatttggtcacagaaaacta
gcaggtttgccagtagaagatgaagcttcagaaagagcccaatttgatgagtggcttaag
aaaaaggggcttggatcaacaggtgacggtcctgaggcaaagtttgtaggaagaaacata
gaggaagattttgaggatgagctggatcgagaggaggaaattcttgagcagaacttgaca
aaactggtagatgatgatgatggtgactctatccctgtacctaaaacttcttccaagtat
aaggacatcaagtacccatcaggcacgaatccagcttgggatggcacatcacctctctca
agtccaacttcaactacttccttacatgatctgatctctccatcttcaaatatttgggga
tcacctaaacttgacaaggaaaacaccaacaaaggaccagctaatactcagtcaccattg
acagagctgcttaaggcagagggcaaaaagaaacatgtgcagagaaggcctttttcacca
gcctttgaggacgactcaattgtccaggctgtgcctcgccaaactctggtaccaccaagt
cgtttcacaacaaagcctcatccagttaatgctatcaaattagaagatctggaaaaggaa
ctcacaacaggtcgtgaaggtgcccctcagcaagttccagatgcagttcggcaaacacct
cataattccatgataggacgaccacctcctggcattcctaggccaatgatgacaccccca
ggtttctcttctccagcaccaaggatgagtaccccacggatgcctccccagatgttccaa
caaagacctagtccatcaaagcatccaatgccaagtatgtctggaatgactggaatgcct
agaatgcctggcatgcccagtatgcctggtatgccaggcgcaagccctcacttgatgagg
acaccgagaacaccacattatccaagacatccatttcccatagtccactcagatcctggt
cacctgatgatgaggggaggtatgatgaatttcccaatgagtccacatcaccaaaggttc
agtagccctcagtttccaaacagaagatttcaggacccaagacagaactatcaaaggcac
cagtatgatggcagaatgtcaaatgataatcgctcacccagacagcaggacagaggggaa
caccatcaccagtttactgatttagagaagaaaattcacagtattttgacagcagctgaa
agcggcccgaaccgatttgatccctacgctggtctaatgacaagacgagagaaagagtgg
ttgatcaagattcagcttcttcagctcactagcaatgaaccagaactagatgattactat
tttcagacatacaccagacggaaggctgcaaaggaacgagcaaagcaaagtgagggtgta
cagcatgatgttgaagataacagggcaagtagagcgccaagaaatatggccttacctcag
tttgaacgagagaaaaagagctacaccccattggactttcaaggttctttagggaaggtt
tcttcatcatctgtgcagcatccaagacaaatggtggatctaatgcacctcagtaaagca
tatgaacaggaaaagcaaggaagttcagctcctttgaaggacacgaagcgacgcagccag
ctcttacttaacattgaaaagagttacgattaccttttgaacattgaaagcttagaaaaa
aggttaattcatgtggaagaaaaagaaaggaatgaactctatgaagccaggcaaagcaat
gtgaagaagctgttcgatctcttaaacctttctacggaaggttcctcaaaggatgatgac
gaactctttgtgcagttcatatcagtccataaaggaaaacgtcttctcagtagagctcta
cccttatttagcacggttcaaatggaagctgtgttgatggcaattgctaggaatattttg
gcactaataaaaagagacaacactgaaccgagcttgcaacatttaatggttcctcttaat
cgagcttctgaactggcatctcctacagtggtaattcagtgtcttaaggacatagtgtct
acacctggtatctccgtctcacaagggtcatcacttagtgcagttcttctcaatcagttt
ggcgtaggactcctgagcatactgctagggagagcagttgtgatttcgaacagtctcact
gaatcagatgatgagatgctgaaatcttggttgaacattgtttctcaagttgcaagcaag
tttcaggacataccagtaaaacagctgggaagaaaccttgaagccgccgacagattagtc
gcgctattgtcaacctgtactgatgtacagactaaagctttattacaggaacacttaaga
ttggcggcttctgcttag

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