Pocillopora damicornis (lace coral): 113670010
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Entry
113670010 CDS
T05773
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113670010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdam03041
]
113670010
03009 Ribosome biogenesis [BR:
pdam03009
]
113670010
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113670010
Spliceosome [BR:
pdam03041
]
Complex A
U2 snRNP components
U2 related factors
113670010
Complex B
113670010
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113670010
Ribosome biogenesis [BR:
pdam03009
]
Eukaryotic type
90S particles
Helicases
113670010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
AAA_22
DEAD
AAA_19
Flavi_DEAD
nSTAND3
SRP54
AAA_7
ABC_tran
TsaE
AAA_29
AAA_30
AAA_16
DUF2573
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
113670010
NCBI-ProteinID:
XP_027041889
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MSKRRLDVDGSSSNSLTTAKRIKEELSNPSNLRGKINPFNGKLFSDRYFDILKKRIELPV
WEYREKFMETMKEKQAFVLVGETGSGKTTQIPQWCLETRIDKRKCVACTQPRRVAAMSVA
QRVADELDVTIGQEVGYTIRFEDCTSPRTILKYMTDGMLLREAMTDPLLDRYAVILLDEA
HERTLATDILMGLLKEVVRQRHDLKIIIMSATLDAGKFQEYFDECPLMTIPGRTHPVEIF
YTPEPERDYLEAAIRTVVQIHMCEEVEGDILLFLTGQEEIEEACKRLKKEIDNLGPEVGE
LRCIPLYSTLPPQQQQRIFDAAPAKRPNGAIGRKCVVSTNIAETSLTIDGVVFVIDPGFS
KQKVYNPRIRVESLLVSAISKASSQQRAGRAGRTRPGKCFRLYTEKAYQTEMQDNTYPEI
LRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDNGDLTSLGSMM
AEFPLDPQLAKMVIASCDHNCSNEILSITAMLSVPQVFMRPNEAKKAADEAKMKFAHIDG
DHLTLLNVYHAYKQSEYYNLILMFSFLMLIFVAHLERSGHYLTVKDNQVVQLHPSTCLDH
KPEWVLYNEFVLTTKNYIRTCTDIKADWLVKIAPQYYDMRNFPMCEAKRVLERIIERLQK
NR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaggaggttggatgtcgatggaagctcatccaactcgttaaccacagcgaaa
aggataaaggaagagttgagtaatccaagcaatcttcgcggaaagatcaatcctttcaat
gggaagctattctcagacagatattttgacattcttaagaagagaattgagcttccagta
tgggagtacagggaaaaatttatggagactatgaaagaaaaacaagcttttgtcctggtt
ggagagactggatctggtaaaacaacccagattcctcagtggtgtcttgaaactcgtatt
gacaaacgcaagtgtgtggcatgtacccagccacggagggttgctgccatgagtgttgct
cagcgtgttgctgatgaattggatgtcaccataggtcaagaggttgggtacaccattcga
tttgaagattgcacaagtcctcgcactatattgaagtacatgacagatggtatgttgttg
cgggaggctatgactgatcctttactagaccgttatgcagtcattcttcttgatgaggct
cacgagagaactcttgctactgatatcctgatgggtctactgaaagaggttgtgcgacaa
agacatgaccttaagatcataatcatgagtgccaccttagatgctgggaaatttcaggaa
tactttgatgagtgtccactcatgacaatccctggacgaactcatcctgtggagattttt
tacactcctgaacctgaacgagactacctggaggctgccattagaacagtggtacagata
cacatgtgtgaggaagtagagggggacattttgttatttcttactgggcaagaggaaata
gaagaagcatgtaagagactgaagaaagaaattgataacttgggacctgaagtaggcgag
ctacgctgtatcccactgtactcaactcttcccccacagcagcagcagcgtatctttgat
gctgctccagccaaacgtcccaatggtgccattggtcgcaagtgtgtggtgtccaccaac
atagctgaaacatctctcaccattgatggtgtggtgtttgtaatagatcctggattttcc
aagcagaaggtgtacaatccccgtatccgtgtagagtcactgttagtttctgctatatct
aaagcgagttcacagcagagagctggccgtgcaggtcgtacacgtcctggcaagtgtttc
aggttgtacacagaaaaagcttatcagactgagatgcaagacaatacataccctgaaatc
ctgaggtccaaccttggtactgtggtgctacagctgaagaagttgggcattgacgacttg
gtgcattttgactttatggatcctcctgcaccagaaaccctgatgagagcccttgaactg
ctgaactatcttggtgcccttgacgacaatggagacctcacatcactgggttccatgatg
gcagagtttccacttgaccctcaacttgccaagatggtgattgccagctgtgaccataac
tgttctaatgaaattctctctattactgctatgttatcagttcctcaggtgtttatgaga
ccaaatgaagctaaaaaggcagctgatgaggctaagatgaagtttgctcacattgatgga
gaccatctgaccttgctgaatgtttaccatgcatacaaacagagtgagtattacaacctg
atcctaatgttcagttttctgatgttaatatttgtggctcatttggagaggtctggacac
tacctgactgtcaaagacaaccaggttgtacaactgcatccatcaacttgtttggatcac
aagccagagtgggtgttgtataatgagtttgtattgaccaccaagaactacattcggacc
tgtacagacataaaggctgactggttggtgaagattgcaccccagtactatgacatgagg
aacttcccgatgtgtgaagccaagcgagtattggagaggattatagagaggttacagaag
aacagataa
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