Pocillopora damicornis (lace coral): 113670419
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Entry
113670419 CDS
T05773
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03022
Basal transcription factors
pdam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113670419
09124 Replication and repair
03420 Nucleotide excision repair
113670419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113670419
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113670419
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113670419
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113670419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
SHOCT
ParE_toxin
Motif
Other DBs
NCBI-GeneID:
113670419
NCBI-ProteinID:
XP_027042360
LinkDB
All DBs
Position
Unknown
AA seq
549 aa
AA seq
DB search
MPSKMADHETVLLEVINTKHKKTGGTLRLMSNELLWIPYGSDNPKLSCAYSEIKVQRISP
EGSSKIQIQIVLHDGNSFTFQFTNDSAVNAKKERDDAKDLLAQLIPVHRKKANKELEEKN
RMLKDNPELYQLYKDLVVSGVITAEEFWANRAKNQDTQVVQSDQAIGLSSALLADMQPES
SGCNEVKYNLNVDTIEAIFKTYPAVKRKHQEVVPHEMPEKDFWTKFFQSHYFHRDRNATR
AMSGDIFTECAKEDEQEQLSRKLATFNDPLLDLTGASPVPEEGYGLTAEAVDPKNNAVTQ
SLFRKLNHHSLMVVQATASGSSVNKEKEKNGKNGKMNEADPPAKKSRLRGMVEYDDLSEQ
QSRELPSLKIADSSKFSQGLIPAIPKERGSVHSKLSHTDISKAIQSNQREVEYWRPNLPG
TLPSDMACHVLTEMSPGGSLMSTTSETSMQHLVSSSVQAEVKLQYNSLSELLRHFWSCFP
IKTQFLEEKMVKMGQSLEKYRDAKLQQFRNQLPAEEAHLANHLVEMLDTALTKYRTWLEK
KSGAKISSS
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgccatccaagatggcggaccacgagactgttcttctggaggtaataaacaccaagcac
aaaaagaccggtggaaccttgcgtctcatgtccaatgaactgctttggataccttacgga
tcagataatcctaaactgtcatgtgcatactctgaaatcaaagttcaacgaataagtcca
gagggcagctcaaaaatacagatacagattgttctccacgatggaaactccttcactttc
cagtttacaaatgactcagccgtaaatgccaaaaaagaaagagatgatgctaaagacctc
cttgctcagcttatcccagtccatcgaaaaaaagccaataaagagcttgaggaaaagaac
agaatgctgaaagataatcctgagttgtatcagctgtataaagatctagttgtcagtgga
gttattactgctgaagaattctgggcaaatagagcaaagaatcaggacacccaagtagta
cagtcagaccaggctattggtttgtcttcagcattgcttgcagatatgcaaccagagagc
tcaggctgcaatgaagtcaaatacaatttaaatgtggatactatagaggccatattcaag
acatatccagctgtgaaaagaaaacaccaggaagttgttcctcatgagatgccagagaaa
gacttttggacaaagttttttcagtcgcattatttccaccgagacagaaatgccacaagg
gcaatgtcaggtgacatcttcactgaatgtgcaaaggaggatgaacaggagcaattgtca
aggaaacttgcaaccttcaatgatcctttgttggacttaacaggagcgtcaccagttcct
gaagagggatatggactaactgcagaagcggtagatcccaagaacaacgcagtaactcag
tccttgtttagaaagctgaatcaccacagtttaatggtggtacaagccacagcttctggt
tccagcgtaaacaaagaaaaggagaaaaatggaaaaaatggcaaaatgaatgaagcagat
ccccctgctaaaaagagtcgtctcagaggaatggtggaatatgacgatttgtctgagcaa
caatccagagagctcccgagcttaaaaattgctgactcgtcaaagttttcgcaaggtctg
ataccggctatcccaaaggaaaggggatcagttcactccaaactcagtcatacagacatt
tccaaagccatccagagtaaccaaagggaggttgaatattggcgaccaaacctacccggg
actcttcccagtgacatggcttgtcacgtccttacagaaatgtcccctggtggatctctg
atgagcacaacttctgagacaagcatgcaacatttagtgtcttcgtcagttcaggcggaa
gttaagcttcagtacaactcactgtccgagctgctaagacacttttggtcatgctttcca
atcaagacacaattcttggaggaaaagatggttaaaatgggccaaagccttgaaaagtac
agagatgccaagctgcagcaattccgcaatcaacttcccgccgaagaggctcatctggcc
aatcacttagtagagatgctagacactgcgctcacaaagtacagaacgtggctggaaaag
aagtcaggcgctaagatctctagtagctga
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