Pocillopora damicornis (lace coral): 113670949
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Entry
113670949 CDS
T05773
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-like
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdam03016
]
113670949
Enzymes [BR:
pdam01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
113670949
Transfer RNA biogenesis [BR:
pdam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
113670949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
CDC45
NOA36
Motif
Other DBs
NCBI-GeneID:
113670949
NCBI-ProteinID:
XP_027042968
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MADVGRIPRCKKGARFHPKEAPFPIPIQSISGKQSSTDRWYYYTGHFRDNCVVIEDSGDL
TFLYKMGFFGKGFLSRSKPEYETISNISQKAFSKSEKLRRLPPKEREIRQSKFRIVRKER
FKNHKQWWQQATGTTCKQDEKTCESLGDKIVNKKRIISPSPKKRKRMHVETAKLKDVTSV
NQLEFCNGTIETETQSNDNDNDDDGDDDDDDDNKEEEDDDDLDYDDDDDRNVLSNSNGDG
EASITNRDLDEVMQDVLRNKSGSSSASRNRNKSDRAIAKAKGTNHKACSTRQDDPYKVYE
HLQLSLEEAFFLSYGLGCLSVLDKDKKPLSLGQMWCAFCEAKQEFIPNYVSYHYFRSKGW
VPKMGIKYGTDLVLYKEGMPFYHSSYSVIVQMVDHQREDTEKSAKTTSVRELSWRQLCGV
GRVNEHAAKELMICYVIKPSDMKNEELSSPKCISRFKIQEVVLRRWIPERAREPDKEKS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtaggacggattcctaggtgtaagaaaggcgctagattccatcctaaagaa
gctccatttcccattcccattcaaagtatttcagggaaacaatcttctactgatagatgg
tattattacactggtcattttagagataattgcgttgtaattgaagattcaggggacctt
acttttctttacaagatgggtttttttgggaaaggatttctgtcaagaagcaaacctgaa
tatgaaactatttcaaatatttctcagaaagcattttcaaaatcagaaaagctaagaaga
ttacctccaaaggagagagaaatcagacagtcaaagtttcgtattgtaaggaaggagaga
tttaaaaatcacaagcagtggtggcagcaagctactggcacaacatgtaaacaagatgag
aagacatgtgaatcactgggagataaaattgtcaataagaaacgaataattagtccttct
cctaaaaagagaaaaagaatgcatgtggagactgctaaactgaaagatgtcacatctgtc
aatcaattagaattttgtaatggtacaatagagactgaaacacaatccaatgataatgat
aatgatgatgatggtgatgatgatgatgatgacgacaacaaagaagaggaggatgatgat
gatttagattacgatgatgatgatgatagaaatgtgcttagtaattccaacggagatggc
gaggcaagcataactaacagggacctggatgaagtaatgcaagatgttttgagaaataag
agtggatcttcgagtgcaagtcgtaatcgaaataaatctgatagagccatcgcaaaagca
aaaggaacaaaccacaaagcatgctccacaagacaagatgatccttacaaagtctatgag
catttacagttgagtttagaagaggcgtttttcctttcatatggacttggttgtctgtct
gtgttggacaaggataagaaaccactgtccttgggtcaaatgtggtgtgctttttgtgaa
gctaaacaagaattcatcccaaattatgtatcatatcattacttcagatccaagggatgg
gttccaaaaatgggaatcaaatatggaacagacctggttctttataaggagggtatgccg
ttttatcattcaagctattctgtgattgtacaaatggttgatcaccaacgtgaggataca
gaaaaaagtgctaaaaccacctcagttagagagctcagttggcgtcagctgtgtggagta
gggcgtgtcaatgaacatgcagctaaggaattgatgatttgttacgtcatcaaaccatca
gacatgaaaaatgaagaactttcctccccaaaatgtatttcaagatttaaaatacaggaa
gttgtactcaggcggtggattcctgaaagggcacgagaaccagataaagaaaagtcttga
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