Pocillopora damicornis (lace coral): 113674180
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Entry
113674180 CDS
T05773
Name
(RefSeq) nuclear RNA export factor 1-like isoform X1
KO
K14284
nuclear RNA export factor
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03008
Ribosome biogenesis in eukaryotes
pdam03013
Nucleocytoplasmic transport
pdam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113674180
03015 mRNA surveillance pathway
113674180
03008 Ribosome biogenesis in eukaryotes
113674180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113674180
03009 Ribosome biogenesis [BR:
pdam03009
]
113674180
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113674180
mRNA cycle factors
Stress granule specific factors
113674180
Ribosome biogenesis [BR:
pdam03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
113674180
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
Tap-RNA_bind
TAP_C
LRR_4
LRR_8
LRR_9
LRR_LRWD1
UBA_8
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
113674180
NCBI-ProteinID:
XP_027046452
LinkDB
All DBs
Position
Unknown
AA seq
666 aa
AA seq
DB search
MAKSLFNKAVEDAALSISLRQDGSRSFKEFDKPDRGRSFRGQPRGRSRGRGRGRGRSSSH
HRSDPHPRSHLAGDDDDDIDMDEGSQRSHSRYNPYSRRPPSRRGDRGSSRGDIKSRLGRV
PDGATGSQGNKSDWYKVVIPQGKKHDKDWLIKRLQNTCEEAFQPVSFHSFKGESSAFFVE
GSKVAEALKRVSHKITVKDGTKLIVSVRPSAPPQNQTSNFPVREVHDGSSRGSDSLEDGT
KQVLKDCLSKRYDITTKALDLSDLFHDEVLKLNNIQGILARYWLASGIVKIIGENCPEVQ
SLDLSNNRLKSLDGFKDLGKETSNLKHIKISNNQLRAVEELDKIKSLSQLQTISLDGNPL
CDIFQDKQNSYISAIRSRFPKVTTLDGHELPPPIGFDLPSEESLPASKESFFGDLAVKEM
VLKFIEQYFKIYDTDNRQGLLQAYHDQAIFSMCVNTEALGKDRGGQRAPSLGDYLKYSRN
LKRVADPERRSSFLKHSKLSVVAFLNELPSTKHDLSSFTVDVSLALPSCLSFAVRGLFLE
NSKTLRSFTRVFLAVPAAGGSALSIINDELHISHASPSQVQGAAVESTIATNSTETLQVS
SAVLGLTSATTQQQQQMILQFAERSTMNVEWSYKCLSENNWNFEKAAMAFSSLKDSGRIP
PEAFVK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagagtctgtttaataaggctgtagaagacgcagcattaagtatttctttgcgt
caagatggatccaggagttttaaagaatttgataagccagacagggggcgttcttttcga
ggacaaccaagaggtagaagcaggggcagagggagaggaagaggtcgtagtagtagccac
catagaagcgatcctcatcctaggtcgcacttagctggtgatgatgatgatgacatagac
atggatgaaggaagccaaagatctcattcaagatacaacccttattccagaagacctcca
tctcgtcgtggtgacagaggaagtagtagaggtgatataaagtctagactagggagagtc
cctgatggagccacaggaagtcaaggaaataagtctgattggtataaagttgtgatacca
caggggaaaaaacacgacaaagattggcttattaagagactgcagaatacatgtgaagag
gccttccaaccagttagtttccattccttcaagggagagtcttcagccttctttgttgag
ggaagtaaagttgcggaagcattgaaaagagttagtcataaaataactgtgaaggatgga
acaaagctgatagtaagtgtgcgtcccagtgctccaccccaaaaccaaaccagtaatttt
cctgttcgtgaagttcatgatggtagcagcagaggaagtgattcattagaggatggcaca
aaacaagtattgaaggattgtctcagtaaacgttatgatattacaacaaaagcacttgac
ctctctgatttgtttcacgatgaagtgctgaaattaaataatatacaaggaatactggca
agatattggctggcatcaggaattgtgaaaattattggagagaactgccctgaggttcag
tcacttgacctaagtaacaatcgactgaagagcttggatggctttaaggaccttgggaag
gaaacatcaaacttaaagcacatcaagatctccaataatcaactgagagctgtagaagaa
ctggacaagataaagtccttgagtcagcttcaaaccatttcacttgatggaaatcctctt
tgtgatatatttcaagacaaacaaaattcatatatcagtgctatcagaagcaggtttcct
aaagtaaccactctggatggtcatgaacttcctccaccaataggatttgaccttccctct
gaagaatctctccctgcttcgaaggaaagtttttttggtgatctggcagttaaagaaatg
gtgctaaaattcatagagcaatattttaagatttatgacacagacaacagacaaggcctt
cttcaagcttaccatgatcaggcaatattttccatgtgtgtcaatacagaagcattaggg
aaggatcgcggtggtcaaagggccccttcacttggtgactacttgaagtacagccgaaac
ttgaaaagagtcgctgacccagagcgtcgaagcagttttttgaagcactcaaaactctct
gttgttgcatttttgaatgagctgcccagcacaaagcatgatttgtcaagtttcactgtc
gatgttagtctggccttgccttcctgcttgtcctttgcggtcagaggattgttcttagag
aactctaaaacattgaggtcttttacaagagtatttctcgctgttcctgctgctggtgga
agcgcgctgagtataattaatgatgagctgcatattagccacgcttcgccttctcaagtg
cagggtgcggctgttgaaagtacgattgccaccaacagcactgaaacgttacaagtcagt
tcagctgttcttggtttgacatcagcaactacacagcagcagcagcagatgattctccag
tttgcagagcggtcgacaatgaacgttgagtggtcatacaagtgcctgtctgaaaataat
tggaacttcgagaaagccgcaatggcgttttcttcattaaaggatagtggtaggattccg
cctgaagcttttgtaaaataa
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