Pocillopora damicornis (lace coral): 113675325
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Entry
113675325 CDS
T05773
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam04382
Cornified envelope formation
pdam04512
ECM-receptor interaction
pdam04518
Integrin signaling
pdam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113675325
04518 Integrin signaling
113675325
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113675325
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113675325
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pdam04147
]
113675325
00536 Glycosaminoglycan binding proteins [BR:
pdam00536
]
113675325
Exosome [BR:
pdam04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113675325
Glycosaminoglycan binding proteins [BR:
pdam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113675325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
113675325
NCBI-ProteinID:
XP_027047686
LinkDB
All DBs
Position
Unknown
AA seq
1855 aa
AA seq
DB search
MGLRAASLFALIFLVCRIANSQDQNDEECNCKAGPKGSRGRPGKTGVNGPPGEEGPAGKD
GLQGPKGYKGEAGVQGPTGTQGDQGMIGVPGFPGINGIPGVPGIAGPKGFMGLCGCDGDK
GEPGRTGTDGTIGVAGDPGEQGPKGPVGDPYDGPIIATKGKPGDTGAKGEMGPSVSTLRA
GPPGEVGPPGIPGEPGPQGEQGRPGPDGDKGLKGNPGPAGPTGSTGERGGGVPGPPGGQG
MKGTAGRPGESGPSGELGDAGAPGFPGASVFGPKGEVGETGPIGPPGAPGTPGVQGMLGD
PGLPGEEGPQGSNGSRGEPGNDEPGPKGMDGPPGLKGIVGVQGELGRKGPKGNQSVFVLF
SFSFLNSIRSEPYFCQEADCPPPKVGAQGPPGSPGNPGERGKQGLRGEQGGKDTCPVCPP
GPQGPKGAKGVPGEKGLPGMNGTDGNKGAEGPTGQRGPQGPDGSPGQKGADGFEGGQGKK
GEKGDAPVGEREEVYQPPGPQGDEGSPGSKGVRGSAGNNGSSGLPGPSGEKGDVGAPGMS
GLDGFPGTNGLPGDRGSKGETGDKGDRPIVPVPDMGRKGEKGAEGDKGASGENISPSDLA
QRLSGERGDNGTVGVKGIAGMDGVQGWRGVNGSMGADGDKGTPGENTTGPPGPAGPPGPQ
GDIGDRGERGAKGDLGMDGSEGPAGRNGSKGMPGEPGDRQDGLRGKDGEDGQKGARGVPG
EGGVVGFPGDPGANGEDGSAGPKGLPGQPGAQGPKGNQGTKGELGDSISGPPGDPGIMGL
PGVPTKGERGEPGSKGDAGSPGTPGQNGPPGNPGDDGPPGDPGNPGPQGMKGRTGVILCG
QENADYAFLMDASRSILPDEFQLVKEYVKDVIEYLSIGPALTHVGVIEYSKSAKMELAFD
KSYDREEIKRIVDKVPHTKGITRIDLALQVASQELFTAAIGGMRNSSRKVMVLLTDGNQT
GTDVAPDQVPLVDAIQPIKALEVKVIAVAIGSVDLDQLRVLVTNNDDILRAGSFAELRNL
VRTTVERSCRGPLGDPGKKGPKGFPGEPGGEGTEGFPGMPGNQGPKGDQGPTGPPGTRGE
GGDKGFTGDEGPPGLVTPGSKGLRGDPGDPGLPGDPGLSGLDGEQGSKGVQGQPGFRGSN
GVVGPDGPPGPPGEAGAVGEQGTIGGPGMTGFNGMDGDMGPRGDSGASGSPGLPGPEGEP
GSFGEPGIDLPGVKGFRGPKGRAGLPGLNGFRGKGGDDGLPGPPGNSTPGEQGGTGPPGI
KGAKGDPGPLPGDGVSLPSGDPGDAGADGKMGMPGLNGDQGLEGQQGESGATGPPGQGGA
IGDQGALGPPGETGARGMPGISGDPGVEGDPGPDGARGDQGDQGEAGSDGLNGLNGVGGP
EGEAGQDGVRGQTGDVGPPGGTGLIGLRGQKGLPGITGVNGSPGSSGTPGDQGPTGEAGA
RGERGDMGPLGLRGPKGLVGPPGFNGIIGVKGEQGSNGTIGSQGTTGEPGNPGPKGEQGP
TTITPGPRGEKGRPGLPGIPGLEGIPGETGPQGPPGNLQGPKGNNGLPGLPSEKKGPTGE
TGLPGEEGIPGFPGDQGLPGQPGPTGIIGKAATGEGYHLVVHSQSTRIPDCPLNLTRLWT
GYSLLYVQGHDTSHGQDLGASGSCMRRFTTMPYLFCNINQQCYYASRNDYSYWLTTDIQI
PMMPISAPAVEPFVSRCAVCEAPGPVVATHSQSTQNPDCPAGWQAIWNGFSFLMHTGAGG
SGSGQSLSSPGSCLRTFRHNPFFECHGRGTCHYFANKYSFWLSTVGQMFVAQTPETLKPG
NLLSRVSRCTVCYRVASKKKKRRRALYPRVLPVQKKLSSASLKLQSAAQRLSRQS
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggggttgagggcggcctctctcttcgccctgattttccttgtttgcagaatagcgaat
tcacaggatcaaaatgacgaggaatgcaattgtaaagcgggacccaaaggttcaagggga
agaccaggaaaaactggtgtcaatggtccgccaggagaggagggtcctgctggaaaagat
ggattacaaggccccaaaggctataagggggaggctggagtacaaggccctacaggaaca
caaggagatcagggaatgattggagtgcctggatttcctggcatcaatggtatacctgga
gtcccaggaattgctggaccaaaaggtttcatgggactctgcggatgtgatggtgataag
ggagaacctggccgcacaggaacagatggtacaataggggtagcaggagatcctggagag
caaggacctaaaggccctgtgggtgacccctatgatgggccaattattgcaacaaaagga
aagccgggtgacacaggagccaagggagaaatggggccatcagtaagtactttaagagca
ggccctcctggagaagttggtccccctggtatacctggtgagcctgggcctcaaggtgaa
cagggtagacctggccctgacggtgacaagggtttgaagggtaaccctggacctgctggc
cctactggttcaacaggagaaagagggggtggagtgccaggcccaccaggtggtcaggga
atgaaaggaacggctggacgtcctggtgagagtggaccgtctggtgaactaggagatgca
ggagcccccggttttccaggtgcttctgtatttggacccaaaggcgaagttggtgaaaca
gggccaattggtcccccaggggcacctggtactccaggtgttcaaggtatgctgggagat
cctggactacctggtgaagaggggccgcaaggtagtaacggttcacgtggcgaaccagga
aacgatgaacctggacccaaaggtatggacgggccaccaggactaaaaggaattgttgga
gttcagggcgagttaggacgcaaaggaccaaaaggtaaccagtctgtttttgtgttgttt
tctttttcatttttgaactcaatacgctctgaaccatatttttgccaagaggctgactgt
ccacctcccaaagtcggtgctcaggggccaccagggtcaccaggaaatccaggagaaagg
ggcaaacaaggattacgaggagagcaaggtggaaaggacacgtgtcctgtttgtccgcca
ggaccccaaggtcctaagggggctaaaggtgtgcccggtgaaaagggacttcctggaatg
aatggtacagatggaaacaagggtgcagagggaccgactgggcaacgtggtccacaaggc
cctgatggttcacctggacagaagggtgccgatggttttgaaggaggccaagggaaaaaa
ggagaaaagggtgatgcgcctgttggtgaaagagaagaggtttatcagccgccaggtccg
caaggtgacgaaggaagccctggttcaaagggtgtgcgtggatctgctggtaataatggg
tcttctggactccctggtccgagcggagaaaaaggagatgtaggggcacccggaatgtcg
ggtcttgatggttttccaggtacaaatggtctaccaggagaccgtggttccaaaggtgag
actggtgacaaaggtgatcgtcccatcgtacccgtgcccgatatgggtagaaaaggcgag
aaaggagccgaaggagataaaggagctagtggagaaaacataagtccgagtgatctagcg
cagcgtttaagcggtgaaagaggtgacaacggtacagtaggagtgaaaggaattgcggga
atggatggagttcaaggatggagaggcgtaaacggaagtatgggagccgacggggacaag
ggaacaccaggagagaatactacaggtccccctggacccgccggtcctccaggtccacag
ggagatataggtgatagaggtgaaagaggagccaaaggtgacttaggaatggacggatcg
gagggaccagcaggaagaaacggatcaaagggaatgccaggtgaacctggtgatcgtcaa
gatggactcagaggtaaagacggtgaagacggacagaaaggcgctagaggggtcccaggt
gaaggcggcgtggttggatttccaggtgacccaggtgctaatggagaggatggttccgct
gggccgaaaggactgccgggacagcctggagcccagggccccaaaggaaatcagggaact
aagggagagcttggtgacagcataagcggtcctccgggtgaccctggaattatgggtcta
ccaggtgtcccaactaaaggcgagagaggagaaccaggctcaaaaggagatgcaggttcg
ccgggaacacctggacaaaacggtcctccgggtaatcctggtgacgatgggcctcctggt
gacccaggtaacccaggtccacaaggaatgaagggaagaacaggagtcattttgtgtggc
caggaaaacgctgactatgccttcctcatggatgcatctcgtagtattctcccagacgaa
tttcagttggtgaaagaatatgtaaaggacgttattgaatacctcagcattggccccgct
ctcacccatgtcggtgtcattgaatacagcaagagcgccaaaatggagctagcttttgac
aaatcgtatgatagagaagaaataaaaaggatcgtagacaaagtaccacacaccaagggt
attacacgaatcgatctggccctgcaggttgcctcacaggaattatttactgcagcaatt
ggaggaatgaggaattcatccagaaaggtaatggttctactaacagatggtaaccaaaca
ggaacagatgttgctccagaccaagtaccccttgttgatgccatacaacccattaaagct
cttgaagtcaaggtgattgctgttgccattgggagtgttgaccttgatcagctgcgtgtg
ttagtgaccaacaatgatgacattttgagggcaggaagctttgccgaacttcggaatctc
gttagaaccactgtcgagaggagttgcagaggtccacttggcgatcctggtaagaaggga
ccaaaaggtttcccaggtgaaccaggaggagaagggacggagggtttcccagggatgcca
ggaaatcaaggacctaaaggagatcagggtcccacagggccaccaggtactcgcggcgag
ggtggagataaaggattcactggagatgaaggacccccaggcttagtaactccaggttcg
aaaggacttagaggagatcctggagatccgggattgcctggtgatcccggtcttagtgga
ctggatggtgaacaaggatcgaaaggtgtccaaggacagcctggatttcgtggcagtaat
ggtgttgtcggacctgacggcccacctggacctccaggagaagcaggagctgtcggtgaa
caaggtacaattggtggcccagggatgacaggatttaatggaatggacggagatatgggt
cctcgtggagactctggagcaagtggcagtcctggtctccccggacctgaaggcgagcca
ggttcgtttggtgaacctgggatagacctaccaggagtaaaaggctttcgtggacccaaa
ggacgagctggattgccaggtttaaacggattccgtggtaaaggaggtgatgatggattg
ccaggccccccaggaaactcaacacctggcgaacaaggaggaaccggtcctcctggaatc
aaaggggcgaagggtgacccaggtcccctgccgggagacggcgtgtcccttccgtctggt
gacccaggagatgctggagcggatggaaaaatgggtatgcctggtttaaatggcgaccaa
ggactagagggacaacagggagagagtggagccactggaccccctgggcagggaggggct
atcggtgatcagggtgccctaggccccccaggagaaactggtgcacggggcatgccaggg
atctctggtgatccgggagtagaaggagatcctggacccgacggtgccagaggcgaccaa
ggagaccagggagaagctggatctgacggtttaaatgggttaaatggtgtaggagggccg
gaaggtgaagcagggcaagatggcgtgaggggacaaactggagacgttggacccccaggt
gggactggtttaattggccttagaggacaaaaaggccttcctggcattactggtgtcaat
ggatctccaggctcttcaggaacacctggtgatcagggcccaactggggaagcaggtgct
cgcggagagaggggagatatgggaccactaggacttagaggacccaaaggtttagtggga
cctcctggttttaacggaattattggagtaaaaggcgaacaggggagcaatggcaccatt
ggtagccagggcacaacaggcgagccaggcaaccctgggccgaaaggtgaacaaggacca
accaccatcactccaggaccaaggggtgagaagggacgccctggactgccaggaatccct
ggcctggaaggaatcccgggcgagacaggaccccaaggccctcctggcaaccttcaaggc
ccgaagggtaacaatggtctgcccggtctaccatcagagaaaaaaggaccaacgggcgaa
acaggacttccaggagaagagggaattccaggcttccccggagaccaggggttacctggt
caaccaggccccacgggtatcataggtaaggcagcaacaggtgaaggttaccacttggtg
gtccacagccaatctactagaatacctgactgtccgctgaatctgactagactgtggact
ggctacagtttgctgtacgttcaaggtcacgatacttctcatggacaagatctcggtgcg
tctggatcgtgtatgagacgtttcaccaccatgccataccttttttgtaacataaaccaa
cagtgctactacgcttcgagaaacgattacagttattggctgaccacagatatacagatt
cccatgatgccaatcagtgctcccgctgttgagccgtttgtcagtaggtgtgctgtgtgt
gaggcacctgggcctgttgttgccactcatagtcaatccacacaaaacccagactgtcct
gccggctggcaagccatttggaatggattcagcttcttgatgcatactggtgctggtgga
agtggtagtggtcaatcgctttcctctccgggatcttgtctcagaactttccgccacaat
cctttctttgaatgccatggtcgtggtacctgtcactatttcgctaacaaatacagcttc
tggctctccaccgttggacagatgttcgttgcacagacgccagagaccctaaaacctgga
aatctcctgagtcgtgtcagccgttgtactgtttgttaccgggttgccagcaaaaagaag
aagcgtcgtcgtgccttgtaccccagagtgttaccagtacagaagaaactttcttcagcg
tcactgaagcttcaatcagcggcgcagcggctgtcacgtcagtcgtag
DBGET
integrated database retrieval system
