Pocillopora damicornis (lace coral): 113675958
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Entry
113675958 CDS
T05773
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113675958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdam03041
]
113675958
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113675958
Spliceosome [BR:
pdam03041
]
Complex C
Other components
Step II factors
113675958
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
DEAD
WHD_HA2
GIPC1_GH2
AAA_22
AAA_19
RSRP
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113675958
NCBI-ProteinID:
XP_027048362
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MEELQQLEQLSLVSKICTELDNHLGINDKDLAEFIIMLGERNSTIDKFQAALAENGAEFP
DSFASNLLRLIQKMKPKLETYDDKPDMSVNENKITAGAVEIKRKAFPGLCIPDQMTENER
KGFEDDEQVASSALGELEALMSKAKQSTSQTDSKKEGRKQSRSRSRSRSRSRSRSRSRSR
EQPSRRDEKRRPRSQSLSPRRDRNRHRDRDHEEGRNSRRRRSRSRSKGRNYPRNRHGSSH
VEKAPPAIPVVNQIYSGKVTTVMQFGCFVQLEGLRGRHEGLVHVSQLRREGRVANVSDVV
HRGQKVMVKVLSMAGSKISLSMKDVDQESGEDLNPTKSRQNIGGEASDMARNPDRPSGIP
VVPVYEEDEPNSRRKVQRITSPEKWEIKQLISAGVLDKADYPDFDDETGILPKDDDSDED
IEIEIVDEEPAFLRGQTKLSVSMSPVKIVKNPDGSLQRAAMTQSALAKERRELKQAQREA
QADSIPKDLGKLWIDPIPDVDGDKPIFAQDMRGVGLTNEDMPEWKRATFGGNKASYGKKT
NLSILEQRQGLPIYKLREELLKAVIENHVLIVIGETGSGKTTQITQYLAEEGLLSAGKLA
CTQPRRVAAMSVAKRVSEEYGCRLGQEVGYTIRFEDCTSSETKIKYMTDGMLLRECLLDP
DLNQYAIVILDEAHERGINTDVLFGLMKKTVEKRSDLKLIVTSATLDAVKFSTYFFEAPI
FTIPGRTFPVEILYTKEAETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILY
ERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYV
VDPGFVKQKVYNSKSGIDALVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLP
TAVPEIQRTNLASTILSLKAMGVNDLLSFDFMDPPPMETMISAMEQLHSLSALDDEGLLT
RLGRRMAEFPLEPQLSKMLIQSVHLGCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAK
FHQAEGDHLTLLAVYNSWKNNKFSNPWCFENFVQARSLRRAQDIRKQMLGIMDRHKLDVV
SCGKTTSRAQKAITSGFFRNAARKDPQEGYRTVTDNQVVYIHPSSALFNRQPEWVVYHEL
VLTTKEYMREVTTVDPKWLVEFAPAFFKMGDPTKLSKRKRQERLEPLYNRYEEPNAWRIS
RAFRRR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacttcaacagctcgaacaattatctcttgtatctaagatttgtactgagttg
gacaatcacttgggtattaatgacaaagatcttgctgagtttataatcatgctgggagaa
aggaactccactattgacaagtttcaggcagctctagcagaaaatggtgctgaatttcca
gactcatttgcatcaaacttgttgagactgattcaaaaaatgaaacctaagttggaaaca
tatgatgataaaccagatatgtctgttaatgaaaacaaaataacagctggtgcagtggag
ataaaaagaaaggcattcccaggactttgcattccagatcaaatgactgaaaatgaaaga
aaaggcttcgaggatgatgaacaagtggcatcatcagctttaggggagttagaagctctg
atgtctaaggctaaacaatcaacctcgcaaactgacagtaaaaaagagggaaggaaacaa
agtagaagcagaagtagaagcagaagtagaagcagaagtagaagcagaagtagaagcaga
gaacaaccatcaaggagagatgaaaaacgaaggccaaggtcacagtctctaagcccaaga
cgtgacagaaacagacatagggacagagatcatgaagaaggaaggaatagcaggagaagg
agaagtagatctagaagtaaaggaaggaattacccaagaaacagacatggcagtagccat
gtggaaaaagccccacctgcaattccagttgtgaaccagatttacagtggaaaagttacc
actgttatgcagtttggttgctttgttcaactggaaggattacgaggacgacatgaaggc
ttagtgcatgtgtcacagctgcgccgtgaaggtcgagtggctaatgtgagtgatgtggtg
catagaggtcaaaaggttatggtaaaagttctctccatggctggtagcaagataagtctg
agtatgaaggatgtggatcaagagtcaggagaagatctgaatcccaccaagtctagacaa
aatattggaggtgaggccagtgacatggccaggaacccagataggccatctggcatccct
gtagtcccagtctatgaagaagatgaaccaaactctaggcgaaaagttcagaggataaca
tcgccagagaaatgggaaataaagcagcttatctcagctggtgtattggacaaagcagac
tacccagatttcgatgatgagactggtatccttcccaaggatgatgattcagatgaagac
attgagattgaaatcgtagacgaggaaccagcttttctgagaggtcaaacaaaattgagt
gtatctatgagccctgtgaaaattgtgaagaatcccgatggttcccttcaaagagcagcc
atgactcaaagtgctctggcgaaggagagaagagaacttaaacaagcccaaagagaagca
caggcagacagtatacccaaagatcttggaaaactgtggattgatcctatacccgatgtg
gatggtgataagccaatcttcgctcaagatatgcgaggagttggattgacaaatgaagat
atgcctgaatggaaacgagctacatttggtgggaataaagcttcatacgggaagaaaaca
aatttgagtatactggaacagaggcaaggattaccaatctacaagcttcgagaagagttg
ctaaaggccgtgattgaaaaccatgttttgatcgtcattggtgaaactgggagtgggaaa
actacacaaataacacagtatctggcagaggaaggccttctaagcgccggaaaacttgct
tgtactcagccaaggcgagtggcagctatgtcagtcgccaaacgagtgtcagaagagtac
ggctgtcgacttggacaggaagtagggtacaccatacgatttgaagactgtacgagttcg
gagacaaagatcaaatatatgacggacggtatgctgcttcgggagtgtcttctcgacccg
gatttaaatcaatacgccatcgtgatcctcgatgaagcacacgagcgcgggataaatacc
gatgtactcttcggattgatgaagaaaactgtagaaaagcgatccgatttgaagttgatt
gtcacctcggccacgctggacgcagtcaaattttcaacgtatttctttgaggctcccatt
ttcacgatcccaggacggacttttcctgtggagattttgtatacaaaagaagcagagaca
gattacctggatgcatcccttatcacggtcatgcagatccatttgactgagccgccagga
gatattcttgtgtttttgacaggtcaagaagaaattgacacagcatgtgagattttgtac
gagcgtatgaaaagcttaggaccggatgttcctgagttgattattctgccagtttatagt
gctttgccatcggagatgcaaaccagaatatttgaccccgccccacctggcagcagaaag
gtggtaattgccactaacattgctgaaacatcgttaacaattgacggtatctactatgtg
gttgatccgggatttgtaaagcagaaagtctacaactccaagtcaggaattgacgctttg
gtcgtgactcctatctcgcaggctcaagccaagcagcgctctggccgcgcgggaagaacg
ggtcctggtaaatgctatcgactgtacacggagcgtgcgtacagagatgagatgctgccg
accgctgtacctgaaatccagagaactaacttggcaagcactatactgtcactcaaggct
atgggagtaaatgatttgctctcctttgattttatggatccaccgcccatggagaccatg
atttcagctatggaacagttacactcactaagcgccttggacgatgagggcctgttaact
agacttggaagacgaatggcggagtttcctctggagccacaattgtcgaagatgttaatt
cagtcggtacatctaggttgcagtgacgaggtgctcaccattgtttccatgctttctgta
caaaacgtcttttacaggcctaaggacaagcaggcacttgctgatcaaaagaaagctaaa
tttcatcaagctgaaggagaccaccttacattactcgctgtttacaactcttggaagaac
aacaagttctcgaatccatggtgctttgagaactttgtgcaggccaggtcactgagacgc
gctcaagacatcagaaaacaaatgcttggtattatggacagacacaagcttgacgtggtg
tcttgtggcaagacgacatcccgggcgcaaaaagccatcacgagcggtttcttccgtaac
gccgccagaaaagatccacaggaaggctaccgcactgtgacggacaaccaggtggtgtac
atccatccatccagtgcgctgttcaaccggcagccggagtgggtggtgtatcatgagctc
gttttaacaactaaggagtacatgagagaggtcactactgtagatccaaaatggctggtc
gagtttgcgcccgcgttctttaagatgggcgatcccaccaaactgagcaagcgtaaaaga
caggagagattggagccgttgtacaacagatacgaagaaccaaatgcttggcgtatttct
cgcgccttcagaagaaggtga
DBGET
integrated database retrieval system
