Pocillopora damicornis (lace coral): 113676990
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Entry
113676990 CDS
T05773
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113676990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113676990
03041 Spliceosome [BR:
pdam03041
]
113676990
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113676990
Spliceosome [BR:
pdam03041
]
Complex B
Other components
Prp19-related factors
113676990
Complex C
113676990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
Mad3_BUB1_I
RPN7
TPR_7
ARM_TT21_C
PPR
ARM_TT21
DHR-2_Lobe_A
DUF6440
RNA_pol_3_Rpc31
AbiH
Motif
Other DBs
NCBI-GeneID:
113676990
NCBI-ProteinID:
XP_027049539
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MPVTSNNLIIEEEDLPYEEEIIRSPYSVKFWIRYIEHKAKKGSNTALNLLYERSLKELPG
SYKIWYLYLKERRRQVRGRPITDPAYEDINNAFERSLVFMHKMPRIWIDYCQFLVDQCKV
TRTRRTFDRALRALPITQHRRIWPLYLKFVRKYHIPETAVRVYRRYLKLEPENTEDYIDY
LKSVGWLDEAATRLAFIVNKEKFVSKEGKSNHKLWQELCDLISKNPDKIKSLKVTDIIRG
GLRRFSDSLGQLWNSLADFFIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQFEESM
ISAKMETTSEMGPSEEDDIDLELRMARFEHLMDRRPLLLSSVLLHQNPHNVHEWHKRVKL
YEAKPKEIINTYTEAVQTVEPKLASGKPHTLWVEFAKFYEQHGQLAEARVIFDKATKVNY
RKVDDLASVWCEFSEMEIRHENYQQALNLMRRATAMPSTKTDYYDESETVQKRVYKSLKL
WSMYADLEESLGTFQSTKAVYNRILDLRIATPQIIINFGTFLEEHRYFEEAFKIYERGVS
MFKWPNVFDIWNTYLTKFIQRYGGAKLERARDLFEQVLEGCPAKFAKSFYLLYAKLEENH
GLARHAMSIYERSTKAVLPEEQFEMFNLYIKQAAEIFGVTHTREIYEKAIEVLPDEQARE
MCIRFADLERKLGEIDRARAIYMHSSQMADPRTTPTFWKVWHDFEVRHGNEDTFREMLRI
KRSVQAQFNTQVNFMSAQMLAAAASKSAGAVGTEEAVSDDMQLLEQQAQAVAAAKAKTDV
AAKLKEKVLFVRAETSQGDNENNEPVANPEEIDIDDDDDDDDEDENRDEEGNDVSII
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgacatccaacaaccttatcatagaagaagaggacctcccctatgaggaggaa
ataattcgaagtccttattctgtgaagttctggatcaggtacattgagcacaaggccaaa
aagggctccaatacagcactgaatctgctctatgagcgatctcttaaagaacttcctgga
agctacaagatctggtatctgtatttgaaagaaagaagaagacaagtcagagggaggcct
attacagaccctgcttatgaggacataaacaatgcatttgaaagatctcttgtcttcatg
cataagatgccaaggatctggatagactattgtcagtttttagtggatcagtgtaaagtg
acaagaacaaggcgcacatttgacagagcattgagggcactgccaataacacaacaccgt
cggatctggcctttgtatcttaagtttgttcgcaagtaccacattcctgagacagcagtc
agagtctaccgaagatacttaaagttggagccagaaaacacagaagattacattgattat
ttgaagtctgttggatggctggatgaagcagcaacacgactcgctttcattgttaacaag
gaaaaatttgtttctaaggaaggaaaatcaaaccacaagctttggcaagaactttgtgac
cttatctctaagaaccctgataagataaagagtctcaaagtcactgacattatccgtgga
ggtttgcggcgattttccgacagcttgggacagctttggaattcactggctgattttttt
ataagaagtgggcactttgaaaaggcgcgagatgtttatgaggaagctattcaaacagtt
atgactgttagagactttggtcaggtttttgatgcctatgcacagtttgaggaaagtatg
atcagtgccaagatggaaacaacatcagagatgggtcctagtgaagaagatgacattgac
ttggaacttagaatggcaagatttgaacatttgatggacagaaggccactgttactgagc
agtgtccttttacatcaaaaccctcacaatgtccatgaatggcacaaaagagttaaactg
tatgaggcaaaacccaaagagatcatcaacacttacacagaggctgtacagacagtggag
ccaaagctagcatccggcaaaccccacaccctgtgggtggagtttgctaagttctacgag
cagcatggtcaactggctgaggcacgagttatatttgacaaggctactaaagtgaattac
cgcaaggtggatgatttggcgagtgtgtggtgtgagtttagtgagatggaaatcagacat
gaaaattatcagcaagcccttaatctgatgagacgagctacagccatgccttcaactaaa
actgattactatgatgagagtgaaactgttcaaaaacgagtctacaagtcactgaaattg
tggtccatgtatgcagacttggaggagagcctgggcacatttcagtccaccaaagctgtg
tataatcgcattctagatctgcggatagcaactcctcagattattatcaactttggtacg
tttcttgaggaacatcgctactttgaggaagctttcaagatatatgagcggggagtgtcg
atgttcaagtggccgaatgtgtttgatatctggaatacctacctcacaaagtttattcaa
agatatggaggcgcaaaactcgagcgtgcacgagacctctttgaacaagtccttgagggc
tgtcctgccaaattcgctaaatctttctatttattgtacgctaaactcgaagagaatcat
ggtcttgcccgtcacgctatgtcaatctacgagagatctaccaaagcagtgttgccagag
gagcagtttgagatgttcaacttgtatattaagcaagctgcggagattttcggtgtcacc
cacacgcgtgaaatctatgaaaaagcgattgaagtgctaccagacgaacaagccagggag
atgtgcatcagatttgccgaccttgagcgcaaactgggagaaattgaccgagccagagct
atttacatgcactcttcacaaatggctgatccaaggaccactccaactttctggaaagtg
tggcatgacttcgaggttcgccatggaaacgaagatacattccgggaaatgttacgtatc
aagaggagcgtgcaggctcagtttaatactcaggtcaatttcatgtctgcacaaatgttg
gcagcggctgctagcaaatctgcaggagcagtaggaacagaagaggctgtgtccgatgac
atgcagctactagaacagcaggctcaggctgtggcagcagctaaggctaagacagacgta
gccgccaagttgaaggaaaaagtcttatttgttagggctgaaacaagtcaaggcgataat
gaaaacaatgaaccagttgccaaccccgaagagatcgacattgacgatgatgatgacgac
gacgacgaagatgagaacagagatgaagagggtaatgatgtttctataatttaa
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