Pocillopora damicornis (lace coral): 113679047
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Entry
113679047 CDS
T05773
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113679047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdam03041
]
113679047
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113679047
Spliceosome [BR:
pdam03041
]
Complex C
Other components
Step II factors
113679047
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IBR
KH_DEAH11
Helicase_C
IBR_1
OB_NTP_bind
RRM_1
IBR_2
KH_DEAH11_2nd
HA2_C
Nup35_RRM_2
RRM_DEAH11
HA2_N
zf-RING_2
DUF1866
KH_1
KH_DEAH11_1st
Motif
Other DBs
NCBI-GeneID:
113679047
NCBI-ProteinID:
XP_027051785
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MLRKVERDANLVCLPLHGKLRQEEQKKVFEEDGDKRKVVFATNCAETSITIPGIKYVVDT
GMVKEMKFEPKRNKSSLEVTSINKSSAEQRKGRAGRTQAGKCFRLYSQEVYEAMEDQLKP
EILRVHLGHAVLKLMELGIEDVRDFDFVESPSFDSITLALELLNSLGAITNGKLTQLGGK
IARVPVEPRLAKVIFEGIDKGVGADALALAAIATVGGSVFFRMGSEEEKQAADSRKVCFC
LNGGDLLTLLEVYRQYLKQPKDLPKRKKWAVANSLNAKSLRMTDETIKELKLTLKHELEI
TISDTLQQDENTDVILQKILFSCYATNLCLFTGHEKAGYRVLSSDQCVQVHPSSALKFLG
ATPQFIVFDQLLKTSRDFVVNVTPVEETWLREMISTGALKYDLENLLSTVLTEMALPCSP
ELMKLTFGGYGRKKVDQIENKVSKSCDDSLVVLEEDKKWGQIKIFVPPRYTVKALSMMGS
IMEESRKILRSEEREEPLREESPGSRMVWGQGGEIRELLMLDMYRTVTVGEIEDGYSAAV
LDHLGSFGDIVKHSFREQNGKMRVFVTFRDSQDALMAVNSPSNSCLDINIKVQPSNSTGD
GNQTRFSQFKVKVKWLRRPGKGTGSVQFVNGEDFFYTLGRIPSLIIKSKRVIFKADKIHN
QQIFMRGLHPETSEEDVISAIEEKLPTVKVMKVFIHRIAEFETADETLVVQKTFLEESLS
GFAVQGDFSVYVGKPSTKSFEGYANLTFQNPEEGEAAIRGLNGMNIPGIGVVTLHPNLST
VLSCARNVYAVIEDEFKETISELESTFEASLIIKVKKKLTDQRVWIEIQSKSTKHFISAT
TVLTEIFNGDKIDCKISKDLEILLTNSAKDVLRTIQKDTGTVISQDWKNRAVRIHGPEAN
RESAKRAINKFLDDSITGNRHSWQIQLRGPNKPRGLLKALFKRFGANLQGLRDIKGVQKI
HVEFRNHVLKIESSDEAEELINSSVEECCKNLSQELFPLQQDHRTQLICGICLCDLDSTA
DVYRLACCGHAYDKSCVIQQLKSPDFPLKCVVEQCGERLVWKDLQNLLNDRERKRLALTA
LDEYVKRNPEIVKYCPTANCGMVYRVSTNGRSFTCDACLAQTCTSCHVQWHDGLTCAMFK
SERQVEGRLVEWMMKDPSNRKKCPKCKTPIEKNQGCNHMECSQCRSHMCWLCLQVFPTGN
DVYDHQRHCPNKTAA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgttaagaaaggttgagcgggatgctaacctagtttgtcttcctctccatggaaagcta
cgtcaagaagagcaaaagaaagtgttcgaagaagacggagacaaacgtaaggtggtattt
gctaccaactgtgcggaaacctctatcaccattcctgggataaagtatgtagtggacact
ggtatggtgaaggaaatgaagttcgaaccgaaacgcaacaaaagttctttagaggtaaca
tccataaacaaaagttccgctgaacagcgaaaaggaagggcaggaaggacacaagcaggg
aagtgctttagactctacagccaagaggtgtatgaggcaatggaagaccaattaaaacca
gagatcctaagggttcatcttggtcatgccgtgctgaagctgatggaacttggtattgaa
gatgtcagagactttgattttgtggaatcgccatcttttgactcaataacccttgcatta
gagttgttgaattctcttggtgcgataacaaacggaaaacttacacagttgggaggcaaa
attgctcgtgttccggtagagccacgcttggcaaaggtcatatttgaaggcattgacaaa
ggtgtaggtgcggatgcgttagcgttggcagccattgcaactgtgggtgggagcgttttc
ttccgcatgggaagcgaagaggagaagcaggcagctgacagtagaaaagtatgtttctgc
ctgaatggtggagacctactgacgttgttggaagtgtacaggcaatacctcaagcaaccg
aaagatttacctaaacgaaaaaagtgggctgttgctaacagcttaaacgctaagtcactt
cgcatgacagacgagactatcaaagagctaaagctgacgttaaagcatgaattggagata
acgatctcggatacgttgcagcaagacgagaacactgatgtgatacttcaaaagattttg
ttttcttgttatgccaccaacttatgcttgtttactggccacgagaaagcaggatacaga
gtgttgtcttcagaccagtgtgttcaagtgcatccatcgtcagcactcaagtttctcggg
gcaacgcctcagttcatcgtctttgaccaactgctcaaaacgtctcgtgactttgtcgtc
aacgttacccctgtggaggagacgtggctccgggaaatgatttcaacaggagctctcaag
tatgacttggagaacctattgtcgactgtgttgaccgaaatggcattgccatgcagtcca
gaacttatgaaattgacgtttggaggttacggaagaaaaaaagttgatcaaattgagaac
aaagtttcgaagtcatgcgatgacagcttggttgtgttagaggaggacaaaaagtgggga
caaataaaaatcttcgttcctccaaggtacacagtgaaagctctgtcaatgatgggaagt
atcatggaggaaagcagaaagatactgaggagtgaggaaagagaagagccactgagggaa
gagtccccaggaagtagaatggtttggggacaaggcggtgaaatacgggagttgctgatg
ctggacatgtacaggactgtcacagttggtgagatagaagatggctactcagcggctgtt
ttagaccaccttggatccttcggagacatagtgaaacatagttttagggagcagaacggc
aagatgcgagtctttgtgacttttagggattcacaggatgcgcttatggcagtgaacagc
ccttccaattcctgtttagatatcaacataaaagtccagccgagtaactcgacaggcgat
ggtaaccaaacacgtttttctcagtttaaagtgaaagttaagtggctcagacgtccaggc
aaaggcacaggatcagtacaattcgtcaatggcgaagacttcttttacacgctcggaaga
ataccctcgctgattattaaatccaaaagggtgatatttaaagccgacaaaattcacaat
caacagatattcatgagaggactccaccctgaaacatcagaggaggatgtgatatctgct
atcgaagagaagcttcccacagtaaaagtgatgaaagttttcatccaccgaatagcagag
tttgaaacagcggatgagactcttgtagtacagaagactttcttagaagaaagtctcagc
ggctttgccgtacaaggtgatttctcagtctacgtaggaaaaccttccacgaaatctttt
gagggatacgccaacctgacgttccaaaaccccgaggagggtgaagccgccataagaggt
cttaatggaatgaacatcccaggcattggtgtggtaaccctgcatcccaacctttcaact
gtgttgtcatgtgccagaaatgtttacgcagtcatagaggatgagttcaaagaaactatc
agcgagttggaatcaacctttgaagcaagtttgatcattaaggtaaaaaaaaaactcaca
gatcagcgtgtttggatagaaattcaaagtaagtctacgaaacacttcatatctgctacc
actgttctcaccgaaattttcaatggggataaaattgactgcaagatttctaaagacctg
gagattcttttgactaactcagcgaaagacgttcttcgaacaattcagaaagacactgga
actgtaatcagtcaagattggaagaaccgggctgttagaattcatggacccgaagccaac
cgagaatcagcaaaacgagctataaacaagtttctcgatgattccatcactggcaatcgc
cactcttggcagattcaacttcgaggaccaaacaagccccgcggactgctgaaagctctg
tttaaaaggtttggcgccaatcttcaaggattacgagacattaagggtgtccagaagatc
catgttgaatttagaaaccacgtactcaagatagagagttcagatgaggctgaagaacta
atcaacagctctgtggaggaatgctgcaaaaatctttcccaagaattgtttcctttgcaa
caagaccatcgaacacagttaatctgtggtatatgcctatgcgacttggattctacagca
gatgtatacagacttgcctgctgcggtcacgcgtacgacaagagctgtgttatacaacaa
ctcaaatctccagactttccgttgaagtgtgtcgtggaacagtgtggagagcgtcttgta
tggaaggatttgcaaaacttgttgaatgaccgcgaaaggaagaggctcgctttgaccgct
ctagatgagtatgtcaaaagaaatcctgaaattgtgaagtactgtccaacggcgaactgt
ggcatggtataccgcgtctcaactaatgggagatccttcacctgtgatgcatgtctggct
cagacctgcacatcttgtcacgtgcaatggcacgatgggctcacttgcgccatgttcaaa
tcagagagacaagtagagggacgtctcgtggagtggatgatgaaggacccaagcaataga
aagaaatgtcctaaatgcaagacaccgattgagaagaatcagggatgtaatcacatggag
tgctcacagtgtagaagccacatgtgttggctgtgcctgcaggtgtttccaaccgggaac
gatgtgtacgatcatcaacgacactgtcccaataagactgcagcatga
DBGET
integrated database retrieval system
