Pocillopora damicornis (lace coral): 113680133
Help
Entry
113680133 CDS
T05773
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113680133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113680133
03012 Translation factors [BR:
pdam03012
]
113680133
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113680133
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113680133
Translation factors [BR:
pdam03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113680133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
AAA_22
ATPase
NACHT
NB-ARC
AAA_19
AAA_30
T2SSE
Cas3-like_C_2
AAA_16
ABC_tran
YkuI_C
PhoH
TsaE
SRP54
Motif
Other DBs
NCBI-GeneID:
113680133
NCBI-ProteinID:
XP_027052927
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MRLLLKTARLHLPRNQLARLVITEVDSKMHKGGGRGKRGRGGHRPSGLTGKQIGLWYRDK
GKQNRELKQRAFVTMDSQHEMRISQLLGEIRQSERTNDDRAEEGASAGTDWYDSPKGEQY
CEQHLHDESDRRSEDQVSMSGENKKKSPVAFKHHFNMGRNLQQDSTLDHQLKEEQQRRFL
SESARCKAMQEFRKSLPAYKQKEELLQLISSEQVIVISGETGCGKTTQVAQFILDDAIEQ
GHGSKCRVICTQPRRISAISVAERVASERDENCGENGSVGYQIRLESKLPREQGSILYCT
TGVLLRWLVSDPLLLGCSHIILDEIHERDILSDFLIIIVKDLLPKRPDLKLILMSATLNS
EMFSAYFDNCKMAHIPGFTYPVQEVYLEEIIEKTRYEITEKAGVSGRGDRPEPKWKKYRR
GKSEAKDRRLEKTNAWLTDSQEDEKQMEWQQYLNSLTGRFSSKTITTLRNMDLERIDLEL
LVRLITHISLRMEEGAILVFLPGWDDISKLHDKLKTQTLFNSDKFRIIPLHSMMPSTNQR
EVFDRPPEGVRKIVIATNIAETSITIDDVVFVVDAGKVKEKTYDVYHNIACLQPVWISKA
SSRQRRGRAGRVQPGYCFHLFTQLRAQSLDDYQLPEMLRTPLEELCLQIKILKLGMIRSF
LSKALQPPEEQAVINALESLQQLKALDANEDLTPLGHHLAALPVNPRVGKIILFGAIFSC
LDPVLTVASVLGFKDPFVFPLGKQKEAEQARLRFAGDTRSDHLALLKAFQGWETSVRKGI
ERDYCWRNFLSVNTMRMIKDMKQQFSGLLYDIGFLESSNPKASSANYNSDNLKLVKAILC
AGLYPNVASINHNPRFSRPPKLRTHQDGTVYLHPKSVNAEVRVYEDNWLIYHEKMKSTSL
FLYDSTMIAPFPLLFFGGEISVFVEEGYETVAIDDFIKFKSPNRIANLVKELRVELDKLL
RQKIAKPDTKLSVGTGTGNRESALLRAIIDLITSEENTNWRKQRALASEAERT
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttttactgaagacagcaagacttcatttaccaagaaaccaattggccaggctt
gtaataactgaagttgactcaaaaatgcacaagggaggtggccgtggtaaaaggggtaga
ggtggacatcgcccttctggtttgacaggaaaacagattggcttgtggtacagagataaa
ggaaaacaaaacagggaacttaaacagcgtgcatttgttacaatggacagtcaacatgaa
atgagaataagtcagctgcttggagaaatcagacaaagtgaaagaaccaatgatgacaga
gcagaggaaggagcatcagctgggacagattggtatgatagtcctaaaggagagcagtac
tgtgaacaacatctgcatgatgagtctgatcgcaggagtgaagaccaggtgagcatgtct
ggtgagaacaagaaaaagagtccagtagctttcaagcaccattttaatatgggcaggaat
ttgcagcaagattctacattagatcatcagttgaaggaagaacaacaaagaaggttcttg
tcagaaagtgcaagatgtaaggccatgcaggaatttcgtaaaagtttgccagcttacaag
cagaaagaggaattacttcaacttataagctcagagcaagttattgttatcagtggagag
actggatgtggaaaaacaacccaggttgctcagttcatcttggatgatgctattgaacaa
ggtcatgggtcaaaatgccgagttatttgtactcagcccaggagaataagtgctatctct
gtggcagaaagagttgcatcagaaagagatgaaaattgtggtgaaaatggaagtgttggt
taccagataagattggaaagcaagcttccacgagagcaaggttctatcctctattgtaca
acaggagtgctgcttagatggctagtgtctgatccattgcttcttggttgcagtcacatc
attcttgatgagattcatgaaagggatattttatcagatttcctgatcattattgtaaaa
gatcttttaccaaaaaggccagatttaaaattgatcctcatgagtgcaactttgaattca
gagatgttctctgcttattttgataattgtaaaatggctcatattcctggattcacctat
cctgttcaggaggtttatcttgaggaaataattgaaaaaaccagatatgaaattacagaa
aaagctggtgtttctggtagaggagacagaccagaaccaaaatggaaaaaatacaggagg
ggtaaaagtgaggcaaaagacagacggttagagaaaactaatgcatggctgactgacagt
caggaggatgaaaagcagatggagtggcaacaatatctcaattccctaacaggaagattt
tcttctaaaacaattacaactcttcgaaatatggatttggaaagaatcgatttggaactt
cttgtccgactgataactcacatctcacttcgaatggaggaaggagcaatactcgttttt
ctacctggctgggatgatattagtaaacttcacgacaagttaaaaactcaaacgcttttt
aattcagataaattccgtatcattcctttacattctatgatgccgtcaacaaaccaacga
gaggtatttgaccgcccccctgaaggtgtcaggaagatcgtaattgctactaacattgct
gaaacaagtatcactattgatgatgtggtgtttgttgtggatgctggcaaggtgaaagaa
aagacatatgatgtgtaccacaatattgcctgtttacagcctgtatggatcagtaaagct
tcttcgagacaaagacgcggtcgagctggaagagtacagcctggatactgctttcatttg
ttcacacaacttcgtgcccagtcccttgacgactatcagctgccagagatgcttcggaca
cctcttgaggaattgtgcctgcagattaagattcttaaactgggtatgatccgatctttt
ctgtccaaagcattgcaacctccagaggaacaagcagtcatcaatgctttagaaagtctt
caacaacttaaagcgctggacgcaaatgaagacttaactccccttggtcatcatttggcc
gctttaccagtaaatcctagagtgggcaagatcattttatttggtgcaatattctcgtgt
ttggatccagttctaactgtggcatctgttttgggatttaaggatcctttcgtgtttcct
ttgggaaaacaaaaagaagccgagcaagcccgcttgaggtttgctggtgatactcgtagt
gaccatctcgccctgttgaaggcctttcagggctgggagacgtctgtccgtaaagggatt
gagcgagattactgttggaggaacttcctatcggtgaacacgatgaggatgataaaagat
atgaaacaacagttctctggattactttatgacattggtttcctggagtcatccaacccg
aaagcttcttccgctaattacaattcagacaatttaaaactggttaaagccatactttgc
gccggcttatatccaaatgttgccagcattaaccacaatcctagattttcaaggcctcca
aagcttcgaactcatcaagatggtactgtgtatttgcatccgaaatcagtgaacgctgag
gtcagagtttatgaagataactggctgatttatcacgaaaagatgaagtctacctcgcta
ttcctgtacgacagcactatgatagcacccttcccccttctcttctttggcggcgagatt
tctgtgtttgtagaagagggctacgaaacagtcgcaatcgacgatttcatcaaattcaag
tctccaaacagaattgcaaatttagtcaaggagttacgagtcgaactcgacaaactgctt
agacagaaaatcgctaagccggatacgaagctaagcgtggggactgggacgggtaacaga
gaaagtgctctgctgcgggcaataattgacttgatcaccagcgaggagaatacaaactgg
agaaaacaacgagctctcgccagcgaagctgaaaggacttaa
DBGET
integrated database retrieval system
