Pocillopora damicornis (lace coral): 113680637
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Entry
113680637 CDS
T05773
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113680637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113680637
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113680637
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Motif
Other DBs
NCBI-GeneID:
113680637
NCBI-ProteinID:
XP_027053472
LinkDB
All DBs
Position
Unknown
AA seq
1758 aa
AA seq
DB search
MTSIEISNRGLWHIITGRSSLQEPDQIGEELKRKKDRLLLGTADYKEPSPQSAEALRKSP
NIKPKRKEFVLKLSKFLNLDEWKSLQLFGSYLENDFRGSKQQLLEMLKNEAQTEALLLKI
MEYYFEERLHILQCTKFLLSYWQDPRHQWREEFAECIEAMQENDVLIMKILEQYKTSCST
TVPLHATAGSSLHLKTKCQRWALQFLREQILLLEIMFLYYKEFVVPAKSLLDLAKLFQSQ
SFGLKQVNRQLFEGQAEVLLPHISYLQVLVLIVSLDLESLRKLIEEDSCSRHHLLQEKAS
LEALDKFFLSCGDQPHHGPVMLAWAAFRYVTIDASQEQFVRRIGGKALQCSVFKYLLGML
RSEEFSTNDVVSNTCKSLIYGLMVIVLALFDEDTLGELPLLVSVLSQTLTEKGLCVDFWD
LDLNTGAGLLLNSARSWFPLQFCPFVQLLKSLAGDKDSAAKVYDYLDKVTSYTELLRENQ
LSDIDCSGVNKIWRIVNPRILYQNLFSPDSKELIMPAGTCGKVAPVPEGPAIIQWSYHYS
CWKLFALEIDSFLESVGSGAAVDCQNVICIVELVNEVLLNDWDKAVYLQPLSSRLYLIIQ
RCTPSPNPPQDLIATCLTCLATVALRDPEQVWHHLQQTGFLPHYTSVKMSKSDKTKVEFL
GTAPGNFGAILSTKERPIGYYPVTMATLDFLLKLIHGMSNAEESGNRAISIIELAACLVF
IMREVFTGFYKWRFGSLRDREEIGKRCLQLFNVVLGLHFTKKMADQASDAMEAEVTDLPW
TPSVLQDTLVLGLLYSEAGQSLLNILGTGVDTVDKLVSVGSSTGGYAIALVELIKLAFSV
LNRLLARKEKDDNISPLEEALTIQVIHQLREKGASSSTSWAWYYLTKIGRFVFPVENAES
DFLVAPMSMHASFGAEAVSLRDAFVSRLRTLTEDIKLKSVILEFIATAVETQPGLIELFL
DLTNKDDKEFVIGQNSCLHAVLDIIDPEKQAGHHIPAELVSAAFYLLHSLWHDRRDAALM
AVRMSPKFWEKLTRPLITGIESHVDEDYRYHMEISCYAMQIIALEAYYVSRGQIDDSLKT
SLKAFCSENRYQYWGQFLKSLDQSMDDDQEKQFEEEKLKLLKAWRTYLVVCSSFQNEIFG
LNDTRRRRLILEDTLQALKSQVSRVVAVESINASVELSSLYLMLLKRWKSCLRDPNPVFQ
CLVDVIDTAHKNDTQLFVHIRVAMFSSFSVLLQHARTENLSDTLLSSHALVLLPLACEPL
EYLRGRFSSEQKQQDRVLELSVFIIDEILNILLANPGQWLPVLREHALFASLVQALDVCI
KTHEKVEFTEAILHLFLSLSRIPMSAEALAMNSISQPLCLGLASLTYSEGTPQASRPKSG
PQSQVSSHNSDKSSQRSWDKVWQLSLAVMASMLRTLRHGFLKDALDFAGVHRERLAEALN
SVSRSQSSDVLAEAEEVTAFLLELAHFFHEWRFTLPDVLILLQSRIGVLCQSCIALLTHP
RLLAHLLEVSKGRASSSAHGKASTPDVQLSLSQTFSREMLRTYSYADDDSFRNSPLVSQT
QSQLLKILCNSLAMLRQFTPDICGILIDQGMDLEEFPPLLSLGFSSPTVDTEEPLSFGTL
LACLNMALSNLGPADMKSPVKSPVRTLSESLPRSLLMFTMENALIIALSQACRYLRDPGL
DLRVKQFLKRELGSELGNFLGGLFRHFARRGLPPSPAGTQTSPSSAARRTPTKALAFTEA
PEQKFFKLADTFVKQVLR
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgacttccattgaaatatctaatcgtgggctatggcacattataaccggacgatcttcc
ttgcaagagccggatcagattggagaagaacttaaacggaagaaggatcgtttactgcta
ggaaccgctgactataaagaaccaagtcctcagtctgctgaagctcttcgaaagtcacca
aatattaaaccaaaacgaaaggaatttgttttgaaacttagtaaatttttgaatcttgat
gaatggaagagtttacagttgtttggcagctacttggagaatgactttagaggctctaaa
caacagctcctggaaatgttgaaaaatgaagctcaaacagaggcacttttgctgaagatc
atggagtactactttgaagaacgtttacacatcttacagtgcactaagtttttgttgagc
tactggcaagaccctagacatcaatggcgagaagaatttgcagagtgcatcgaagctatg
caggaaaatgatgttttgattatgaagattttggaacagtacaagacttcttgttctacc
acagttcctcttcatgctactgcaggatcatcacttcatctgaagacaaaatgtcagcga
tgggccttacagtttttaagagaacagatactgcttctggaaatcatgttcctctattat
aaggaatttgttgttccagccaagtccctgctagacttagcaaaactatttcagagccag
agttttggattgaagcaagtcaatagacagctttttgaaggacaggctgaggtcttactt
cctcatatcagttacctgcaggtgttggttctcatagtttcacttgacttagagagttta
aggaaattaatagaagaggacagctgttcacggcatcatttactccaggagaaagcctca
cttgaggctctagataagttttttcttagctgcggagatcagcctcaccatggacctgtc
atgttggcctgggcagcgtttagatatgttactatagatgccagtcaagaacagtttgta
agaagaattggtggaaaagcattgcaatgttctgtgttcaaatatttacttgggatgtta
agaagtgaggaattctctacaaatgatgttgtgtctaacacttgcaagagccttatatat
ggactgatggtgatagtgctggcactgtttgatgaggatacactgggagagctaccactg
ttggtctctgttttgtcacaaactcttactgagaaaggtctttgtgtggatttctgggat
ttggacttgaatacaggtgctggtctccttttgaattcagccagaagttggtttccactc
cagttttgtccatttgtgcaacttctgaaatccctagctggtgacaaggattctgcagct
aaggtttatgactatttggacaaagtgacatcatacactgagttgctgagagaaaaccag
ctgagtgacatagactgttctggtgttaataagatctggaggattgttaatccaagaatc
ctctatcagaatttgtttagtccagattcaaaagaactcattatgcctgctggcacatgc
ggaaaagttgctcctgtacctgaaggacctgctataatacaatggagttatcactattcc
tgctggaaactttttgcattggaaattgattcattccttgaatctgtgggatctggagca
gctgtggattgtcaaaatgtcatttgtattgtggagttagtcaatgaggtcctactcaat
gactgggacaaggctgtttatctccagcctctctcttcccgtctgtatctgattattcag
aggtgtacaccatcaccaaaccctccccaagatttgattgccacatgtttgacatgctta
gctactgttgctttgagagatccagaacaggtgtggcatcatcttcaacagacagggttc
cttcctcactacacttcagtcaaaatgtcgaagtcagacaaaaccaaagtggagttcctt
ggcacagcaccaggaaacttcggtgcaattttaagcactaaagagaggccaattggttat
taccctgtcaccatggcaacattggattttcttttgaagctgattcatggaatgagtaat
gctgaggaatctggaaatcgggcaattagtattatcgagcttgctgcctgtctagttttc
ataatgagagaggtgttcacaggattttacaaatggagatttggtagcctgagggacaga
gaagaaattgggaagagatgtcttcagttgttcaatgttgttcttggccttcacttcaca
aaaaaaatggctgatcaagccagtgatgcaatggaagctgaagtcacagatttgccatgg
actccatcagttttacaggacaccttagttcttggtttgttgtactcagaagctggacag
tcactactaaacattcttggcacaggggtggatactgttgataaacttgtgtctgtggga
agttctacaggtggatatgccatagcccttgttgaactgatcaagctggcattttctgtg
ctgaacagactcttggctagaaaagaaaaggatgataacatctctcctctggaagaagca
ctgacaatacaagtgattcatcaactgagggaaaaaggagcaagctcttccacaagctgg
gcttggtattatttaacaaaaattggtagatttgtcttcccagtggaaaatgcagagagt
gattttttagtggctcccatgtcaatgcatgcaagttttggtgctgaagctgtttctctg
agagacgcttttgtgtcaagattaaggactcttactgaggatatcaaactcaaatcagtt
atactggagtttatagcaacagctgttgaaacacaacctggactgattgagctctttctt
gatttgacgaataaagatgacaaggaatttgtcattggacagaatagctgtcttcatgca
gttttagatattatagaccctgagaaacaggcaggtcaccacattcccgctgagctagtt
tcagcagcattctatttacttcactctctgtggcatgacagaagggatgctgctcttatg
gcagtaagaatgagtccaaagttttgggagaagttaactcgaccattaataacaggaata
gaatcacatgtagacgaggattacagatatcacatggaaataagttgttatgccatgcag
ataattgcattagaagcttactatgtctcaagaggtcaaattgacgacagtctgaagaca
tccttgaaagctttctgttcggagaacagatatcagtactggggtcagtttctcaagtct
ttggatcaatctatggacgatgatcaagaaaaacagtttgaagaagaaaaactcaaactg
ctcaaagcctggagaacatatttagttgtttgttcttcttttcagaatgagatatttggt
ctaaacgatactcgtcgaagaagattaatcttggaggatactcttcaggcgctcaagtcc
caggtttccagagttgtagccgtagagagtataaatgcgtctgttgaactgagtagtctt
tatctgatgctgctcaagaggtggaagagctgtcttcgggatcccaatccagtgttccag
tgcttggtggatgtcattgacactgcgcacaagaatgacacacagttatttgtccatatc
cgtgtggccatgttctcgtccttctcagttctgcttcagcacgccaggactgaaaactta
tccgacacgttactgagcagtcatgcgttggttcttttaccgctggcttgtgaaccactg
gaatacttaagaggaagattctcgagcgaacagaagcaacaagatagggttcttgaactg
tctgtgttcatcatcgatgaaattctgaacattctgctcgccaaccctggtcagtggctt
cctgtgttgagagagcatgcgctgtttgcgtctctggttcaggccctggatgtgtgtatt
aagacgcacgagaaagtagaattcaccgaagccattcttcacttgttcctgtcgctgtca
agaataccaatgagtgctgaggccctggccatgaatagtatatcccaaccactttgccta
ggattggcttcgctgacttactctgaaggcacaccacaggcttctcggcccaaatctggt
ccccagtctcaggtatcctctcacaactcggacaaaagtagccaacgaagctgggataaa
gtgtggcagctttccctcgctgtgatggcgtccatgctgcgcacactcagacatggtttt
ctcaaagatgcactagactttgcaggagtacacagagaaagactcgcagaggccctgaac
tctgtgagccggtctcagtcttcagacgttttggcggaagcagaggaagtgactgctttc
ttactggaacttgctcatttttttcacgaatggagattcactctgccagatgtgttaata
ctacttcagagccgtattggtgttctttgccaaagttgcatagctctgctgactcaccca
agattgcttgctcatttgcttgaggtgtccaaagggcgtgcaagctcaagtgcacacggg
aaagcctcgacaccagatgtgcagctctcgctgagccaaaccttctccagagaaatgctc
agaacatactcatacgcagatgatgactcttttagaaacagccctcttgtctctcaaact
cagtcacagttgttgaagattctctgcaactcactggcgatgctgcggcaatttactccg
gacatttgtggtattctcatagatcagggtatggatcttgaggaattccccccgctgctt
tctctcgggttcagttccccgactgtggacactgaagagccgttgtcgtttggtactctc
ttggcctgcctcaatatggccctctccaatcttggcccagctgacatgaagtcacctgtg
aaatcaccagtccgaactctgtcggagtcattaccgagatctcttctgatgttcactatg
gagaatgcgttgatcatcgctctatctcaggcttgtcgatacttgcgggatcccggactg
gacctgcgggtcaagcaatttctaaagagagaacttggtagtgaactgggtaattttctt
ggaggtctcttccgtcactttgccagacgtggtcttccaccatcaccagcgggcactcag
accagtcccagcagcgcagcaaggaggacaccgactaaggctctggctttcaccgaagca
cctgaacagaagttctttaaactggctgatacctttgtgaagcaagttttaagataa
DBGET
integrated database retrieval system