Pocillopora damicornis (lace coral): 113681024
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Entry
113681024 CDS
T05773
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113681024
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdam00536
]
113681024
Glycosaminoglycan binding proteins [BR:
pdam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113681024
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
113681024
NCBI-ProteinID:
XP_027053884
LinkDB
All DBs
Position
Unknown
AA seq
700 aa
AA seq
DB search
MGNPGLPGDDGQSGAPGEDGRPGSLGMPGPRGAKGNDGVNGIPGRSGKRGSEGLKGPPGT
PGIPGLMGGPGPLGPQGPAGQKGGLGDKGGKGEIGDLGTKGAAGELGSIGSEGEPGNEGR
PGAVGLRGTPGNPGRPGPHGREGPAGRPGKDGRPGIPGTKGAQGPPGRAGKPGLPGLQGI
FGTSGENGLSGKQGQMGQIGPPGEPGPKGHQGREGIPGFAGRPGSPGADGEVGDRGTDGI
PGALGEPGFLGFPGPAGDEGSPGIDGQPGIRGQDGEPGQDGEPGEKGDEGESGRLGKPGQ
QGMIGFMGESGEKGERGVQGETGDIGANGSTGPIGLPGAEGIHGEAGDEGDSGLEGETGD
PGFPGSLGMPGPPGEEGAVGEPGRNASIGPLGPKGVMGPQGPPGPQGFTGAEGVVGPQGE
HGSPVSTNILSTISPXGPPGPPGPPGEQGLPGKIPLGWTHSHQTQQNKGPGFRLYSTQEE
HAGTTEYYLRGLSSVIYFYKSQNGTRTHPARSCRELNLEHPDYPSGEYWIDPNEGCSSDA
EYVYCDFERGASCVYPKNKQITAPDAKPFQWISEATSDLELMGYSMVPVQMRFLRLLSRR
VSQNITYLCYNSRAWDDDGGRTIKLQGVNEMELTGNDRIKPVVLKNGCKELNDEWHETIL
EINTVDKEALPIIDMAPFDIANSEKKKEFLLELSPVCFYH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggggaatcctggcttgcctggtgatgatggtcagtctggtgccccgggagaggacgga
agacctggatcacttggaatgccaggtccacgtggagcaaaagggaatgatggtgtaaac
ggaataccaggtcgaagtggaaagagaggttcagagggcttgaaaggcccaccaggaacg
ccaggaattccgggattgatgggaggacctggtcccttaggaccacaaggtcctgcggga
caaaaaggaggacttggagataagggagggaaaggcgaaattggagacctgggaaccaaa
ggagcagctggagaattgggttccatcgggtctgaaggcgaacctggtaatgaaggacgt
cctggagctgtaggtttaagaggtacaccaggcaatccaggccgtccaggtcctcatgga
agagagggtcctgcaggtagaccaggaaaagatggtagaccaggcattcctggcacaaag
ggtgcccagggacctcctggacgagcaggaaaacctggactgccagggcttcagggtata
tttggaacaagtggcgagaatggtttatcaggcaaacaaggacagatgggacaaattgga
ccacctggagaacctggaccaaagggacaccaaggaagggagggaatacccggtttcgca
ggacgtcccggatcgccaggagcagatggagaagtgggagatcgtgggactgatggtata
cccggcgcacttggtgagcctggatttctgggatttcctgggccagccggggacgaagga
tcccctggtatcgatggacaacctgggatccgtggacaagacggtgagccgggacaagat
ggagagcctggagaaaaaggagacgaaggggaaagtggaagacttgggaagcctgggcag
caaggaatgattggttttatgggagagtctggggagaaaggggaaagaggagttcaagga
gagacgggagatattggcgcgaatggaagcacgggaccgataggattacctggagcggag
ggaatacatggagaggccggcgacgagggagacagtggattagagggagagacgggtgat
ccaggatttccaggttccctaggaatgcctggtccgcctggagaggaaggtgcagtaggc
gaaccagggcgtaatgctagtattggaccactgggaccaaagggagttatgggacctcaa
ggaccacctgggccacaaggcttcactggagccgagggggttgtcggacctcaaggagaa
catggaagtcctgtaagtacaaatatcctaagtactatttcaccctagggaccccccgga
ccacctggcccaccaggagaacagggacttcctggaaaaatacctcttggttggacgcac
tcacatcagacccaacaaaataaaggtccaggatttagactgtactcaacacaagaggaa
catgctggtactacagaatattatcttaggggtctcagcagtgttatttatttctataaa
tcacaaaatggcaccaggacacatcctgcgcgatcttgtagggaactcaaccttgaacat
cctgattatcccagtggtgagtactggatagatcccaacgaaggatgctccagtgatgca
gaatatgtttactgcgactttgaacgaggagcttcctgtgtttatccaaagaacaaacag
attacagccccggatgcaaaaccattccagtggataagcgaagcaactagcgacttagaa
cttatgggttacagcatggttccggtccaaatgagattcttgagacttctaagcaggcgt
gtgtcgcagaatattacctatctttgttataactcacgcgcctgggacgatgacggaggt
cgaacaattaagctgcaaggtgtaaatgaaatggagcttacgggtaatgaccgaattaag
cctgttgtcctaaagaatggatgcaaggaactaaacgatgagtggcatgagacaatttta
gagatcaacacagttgataaggaggcgctaccaatcattgacatggctccatttgacata
gccaattctgaaaagaagaaagagtttttactagagcttagccctgtttgtttttatcac
tga
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