Pocillopora damicornis (lace coral): 113682719
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Entry
113682719 CDS
T05773
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113682719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113682719
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113682719
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113682719
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
DUF6082
Motif
Other DBs
NCBI-GeneID:
113682719
NCBI-ProteinID:
XP_027055683
LinkDB
All DBs
Position
Unknown
AA seq
2458 aa
AA seq
DB search
MTTCVDSLSLALGQISFAVNDLTKKNYKATLKEIHELIEKHGFEAERHLFRCLFSFIDFA
GDGKNNGKDFLQCQFLIQECQMLVSKPNFSSILCYAIETPEHKQRTLRPSQQLLPNISRV
LKLNKVQEVIFGLSLLSSSNDDLKNHAGQFVKHKLPDLLRSYTDADVGGVQEGGLTDVAI
EVLHRVLSHVIHGPREQVGVGDDQVSAFLETLKKDFPKERVPVVLAPLLYPETKDISTDN
LFPEPSSPSKVVMEDDLADLMLEIGYSSCASVEDCQDTLTNFGVQDITPASVARVLGMMV
KTVFGLGEHVIVQNYGNSSVSLDKLGLSELTPGPATWNVEVFVQALREVIPLFNWRQVIQ
ELDYPEFVVPSREGLQLLLTACHRGLMEIFPVDVLYRTWTNTEGQLSWIQQILASPDLFC
FADYPCHTVVIDLLKTAPEDDNREIATWKSLNLSETLLRLAEAGHYDTVKSLFNFPLKHC
PDVLLLALLQINPLWLSLRNELVSQLIPVFLANHPNSGSVLHYVWHGQGQSASIRQLVMQ
AMAEWYVKGDMDQGRLSRILDVAQDLKALSMLLNGSPFVFVIDLAALASRREYLKLDKWL
KDKLKEHKEEFAQSCIVFLRRRCPSLLGVTIDKELPKSAQLPQETVVTMLSCLQAFLSQA
PPELAETISQMLTNHGPLVKARPSAAVVGIPFKRQGSLDAGLPPNLSGQLDPLTGLNIPQ
SPLPTTPATPTTQLPSFPPHPLTGSVLGPTSSLGAVGSMSTGLPQAVQKPQSQLGQLPLT
TPATSSSGLQSPSFSSSQNPLLSQLHQAGGLGQSIGGSVLDARLLVGLGIQKQLGGSLLQ
QQQQQQQSALLSQSRNQADKLRQAASTADVAQVWPGMDQSFTKEVEDEANSYFQRIYNHP
PNPTISIDEVLEMLKKFKDSPVKKERDIFLCMLRNLFEEYRFFPQYPDKELHTTACLFGG
IIEQGLVTYMALGIALRYVLEALRKPFGSKMYMFGIAGLDRFKTRLKDYPHYCQHLASIP
HFMEFPPTLIEYIEYGQQSREPPMGSRNVQDPLASRLLNRATPTLTSVSGTSTFTSTAVS
RPVPLGPSIPSIPLGSGPVPSLPLVPSVSSTNTAVSSPSKPVTTSAASPVRGKEPSIATA
NNIDTLLGATESSEIVQPPENIQDKVHFIFNNISQATLSQKAEEMKNLVQNEYTLWVSQY
LVMKRASIEPNFHQLYLEFMESLDITNFSKEVLKETYRNIKVLLQSDKVPANFSDRSLLK
NLGHWLGLQTLARNKPILMKDLDVKSLIIEAYFKGQQEMLYVVPFVAKIIESSAKSRVFR
PPNPWVMAIMSVLVELHQVPDLKLNLKFEVEVLCNTLSIEMKEIKASELLKDPEKLKHIP
HQLSSPEKDKQPAASSSSTPTPTGSSQQGQPPVAPPPPQYSYQEINVASLAGLAPHIQVN
TQIPLFQQHPHLKQFVRPAIERAVQELVHPVVERSIKICLTTAEMIVKKDFALDPEESRM
RAAAHHMVRFMTAGMALITCREPLLISINNNLRSNFQAALRGANQQQKELIEQAASVISE
ENTELACAFIQKTAVEKALPEMDKRLTTEFDVRRHARSEGRRYCDPVVLTYQAERMPEQI
RLKVGGVNASQTAVYEEFARSIPGFQPPAAGEAISTPPLPKPVQYEHGILGNAEAFMPEE
VVQILGKCAAEIEQHLHAIIAPPTNQHVVTIHSLLDAVVQARISRDNMTALRLLHKAVEG
LLEGVAPLATDAELSLRYRDCHLIVLRGLQDPRGYGPMWTARHVTKFVCDCPPDLKFNVD
AIDILIRSHLINMREFDLHLVQCIDNGHNLQALHFAIQLAKYVSDEKHSPHVTENDLYHT
IEALTRIAHSRQNNEGLSSLLEASHNGPPSQSVGGGHHEMGDNKAPGGPTSLTSSVSSGV
SSNFHGYEDPPGLHEKVEYLLREWVRLCHQPGAGKESEKAFSTFVALLHQQGILRTDDLI
TRFFRISTELCVEVTYRALGDHPNSPTMARAKCHNTLDAYCRLIALLVRHSGDASNNVTK
INLLSRVLGTVATVLFQDHEIRHTEFQQLPYHRIFIMLLVELNQPEPILEAINFQVLQTF
STVFHALRPSRASGFAYAWLELISHRLLMSKLLLNTPQQKGWVLFQQLLIDLFKFLAPFL
RNAELAKQTHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQMRNLILSAFPRN
MRLPDPFTPNLKVDLLTDIAHSPRILTNFASAIQPANFKKDLDSYLKTRAPVTFLTELRT
HLQVSNEAGTRYNVPLMNALVLYVGTQAITYIHSKSGTPSMSTITHSSHMDIFQNLAVDL
DTEGRYLFLNAIANQLRYPNSHTHYFSCVLLYLFAEANTEAIQEQITRVLLERLIVNRPH
PWGLLITFIELIKNHQYKFWTHEFVHCAPEIEKLFESVARSCMQQKQAPPRDTAENRE
NT seq
7377 nt
NT seq
+upstream
nt +downstream
nt
atgactacatgtgtagactctttgtctctagctctcgggcaaattagctttgcagtcaac
gatttaaccaaaaagaattacaaagcgaccttaaaagaaatacacgagcttattgaaaaa
catggctttgaggcagagcgtcacttattccgttgcttattctcttttattgactttgct
ggtgatggaaagaataacggcaaagacttcctgcagtgccagttcctaattcaagaatgc
cagatgcttgtttccaaaccgaacttttcctccattttgtgttatgccatcgagacgcca
gaacataagcaaaggacgctgagaccttcccaacagttactgccaaatattagcagagta
ttgaagctaaacaaagtacaagaggtaatatttggccttagccttttaagttcctcaaat
gatgatttaaaaaaccatgctggccaatttgtcaaacacaagttgcctgaccttttgaga
tcatacaccgatgcagatgttggaggtgtacaggaaggaggcttgactgatgttgctatt
gaagtgttacatcgtgttttgtctcatgtgatccatggaccaagagaacaggttggagtt
ggagatgatcaagtgtctgccttcttggaaaccctaaagaaagattttcccaaagaacgt
gtgcctgtagtccttgctcctcttctttatcccgagacaaaggatatttcaactgacaac
ctttttccagagccatcatctccttcaaaagtagtgatggaagatgatttggctgatctt
atgctggaaataggatattcaagctgtgcaagtgttgaagactgtcaagataccttgact
aactttggtgttcaagacatcacaccagcatcagtagccagagtacttgggatgatggtc
aaaacagtgtttggtcttggtgaacatgttattgtacagaattatggaaatagttcagtt
tcattagacaaattgggactcagtgaacttaccccaggtcctgctacatggaatgtggaa
gtttttgtccaagcattgagggaagtgattccattattcaactggcgtcaagtgattcaa
gagttagattatcctgagtttgttgttccgagtcgggaagggcttcagctattgttaact
gcttgtcacaggggactgatggagatatttccagtggatgttctctacagaacctggacc
aacacagaaggccagctttcctggatccaacagatccttgccagtccagatctgttctgt
tttgctgactatccatgtcacacagtagtaatagacctacttaagacagcccctgaggat
gataatagagagattgcaacatggaaatctctcaatctgtcagaaaccttgttaagacta
gcagaggctggtcactacgacacagtaaaatctttgtttaattttcctttgaagcactgc
ccagatgttctgctgcttgccttgctgcagataaatcctctatggctttcacttcgtaat
gagcttgtgtcacaactcatcccagtgtttttggctaaccatcccaactctggcagtgtt
ttgcattatgtgtggcatggtcagggccaatcagcatcaattcgccaactggtgatgcaa
gccatggcagaatggtatgtgaaaggagacatggatcaaggaaggctatccaggatcttg
gatgtggctcaggaccttaaggccctgtccatgcttctgaatggatctccatttgtgttt
gtaattgaccttgctgctctggcatcacgccgagaataccttaagttggataagtggcta
aaagacaaacttaaagagcataaggaggaatttgctcaatcatgtattgttttcttgaga
cgtcgctgtccctctttgctcggggttaccattgacaaggaacttccaaagagtgctcag
cttcctcaggagacagtggttaccatgctttcatgcctccaggcatttttaagtcaagca
cctccagaacttgcagaaaccatcagtcagatgttgactaaccatggtcccctggtgaag
gcgcgacctagtgctgctgtggttggaattccattcaagagacaaggaagcttggatgca
ggactacctccaaacctttctggacagcttgaccctctgacagggctcaacatccctcag
tcacctctccctacaaccccagccacacccactacccagttaccatcattcccaccccac
cccctcactggttctgtactcggacccacaagcagccttggagctgttggtagcatgagc
acaggtctgccccaggcggtacaaaagccacagtctcagcttggacagcttcctcttaca
acaccagcaacatcaagctcagggctacagtccccaagtttcagctcttcgcagaatccc
ctgttgtcgcagcttcatcaagcaggtgggctaggacagtctattggtggatcagtactg
gatgccaggctcttagtaggccttggaatccagaaacagcttgggggctctttactacag
caacaacaacagcaacagcaaagtgctctcctctctcagtcaagaaatcaggcagataaa
ttacgacaagctgcttccacagcagatgttgctcaagtgtggccaggtatggatcagtcc
ttcacaaaagaagtagaggatgaggcgaactcatactttcagagaatttacaatcatccc
ccgaatcctaccatcagcattgatgaggtgctcgaaatgctgaagaaattcaaagattca
cctgtcaagaaagagagggatatttttctctgcatgcttcgcaatttgtttgaagagtac
agattctttcctcagtatccagacaaagagcttcacacaactgcttgcttgtttggggga
ataattgagcagggacttgtaacgtacatggcccttggaattgctttgcgttatgtcctg
gaggccttgaggaaaccgtttggctcaaaaatgtacatgtttggaatagctgggctcgat
agattcaagacaaggctcaaagactacccgcactactgccagcatcttgcatcaatcccg
cattttatggaattcccgcccacgttaatagagtacatcgagtatggacagcaatccaga
gagccaccaatggggagcagaaatgtacaggaccctttggcgtcaagattgctcaaccga
gctactccaactctgaccagtgtatcaggtacctcgaccttcaccagcacagcagtcagc
agaccggttccacttggtccttccattccctccatcccgttaggttcaggaccagtgcca
tcattacctctggtcccctctgtctcttcaacgaacactgctgtatcgtcgccttctaaa
ccagtgacaacatcagctgcatctcccgttcgaggcaaggaaccatccattgccactgca
aacaatattgataccttactgggtgctacggaatcgagtgaaatagttcaaccaccagaa
aatattcaagataaagtacattttatcttcaacaatatctcccaagccactctgtcacag
aaggctgaagaaatgaaaaatcttgtccagaacgagtacactttgtgggtatcacaatac
ttggtgatgaagagagccagcattgaacctaatttccatcagctgtacttggagtttatg
gaatcactcgacattacaaacttttcaaaggaagtgcttaaggaaacatacagaaacatc
aaggtgcttctacagtccgacaaagtcccggcaaacttctctgaccgatcgttgctaaag
aacctcggccactggttgggactccagaccttggccagaaacaaacctatactaatgaag
gatcttgatgtaaagtcgttgattatcgaagcgtactttaaaggacagcaggaaatgctc
tatgttgttccatttgtggcgaaaatcatagaatcctcagccaagagtagagtgtttagg
ccgcccaacccgtgggtgatggccatcatgtcagtgttggttgagctgcatcaagtacct
gacttgaagctgaatcttaaatttgaagtagaagtcctttgcaacacgctatccattgag
atgaaggaaattaaagcttcagagctgctcaaggatcctgaaaaactgaagcacatccct
caccagttgtcttctccagagaaagacaaacagcctgcggctagtagcagttctacgccc
acccccacaggttcatctcaacaaggacagcctcctgtggcacctccaccccctcagtat
tcatatcaggagattaatgtagcctcactcgcagggctggcaccacacattcaggttaac
acgcagatcccactgttccagcagcacccacatcttaaacagtttgtacgtccagctatt
gagagagccgtgcaagagcttgttcatccagtggtggagagatccattaagatttgcctt
accacagctgagatgatagtgaagaaggattttgccttggatccggaagagtcccgaatg
agagccgccgcccatcacatggtccgcttcatgacagcaggcatggctctgatcacgtgt
agggaaccgctccttattagcatcaataacaatcttagatcgaacttccaggctgctctg
agaggtgctaaccagcagcaaaaggaattgattgaacaagctgcatctgtcatcagtgag
gagaacacagaactggcgtgtgcattcattcagaagacagcggtagagaaagctttacct
gagatggacaaacgtctcactacagagtttgacgttcgtcgccatgctcgtagtgaggga
cggcggtactgtgatccagtggttttaacatatcaggcagagcgcatgcctgaacagatt
cgactgaaggttggtggagtaaacgccagtcaaacagctgtgtatgaagagtttgcacga
agtattcctggattccaacctccagctgcaggcgaagccatctccactccacctctgccg
aaacctgtccagtacgaacatggaatactcggcaatgctgaggcctttatgcctgaggag
gtggtacagattctcggtaagtgtgcagcagaaatcgaacaacatctgcacgccatcatc
gctccgcccaccaatcagcatgtcgttactatacacagcctgctggacgctgtagtgcag
gcgcgaatttcaagagacaacatgactgctctgaggctgttacacaaggctgtagagggt
cttcttgaaggagttgcgccattagctactgatgcagagttgtctctaagatatcgtgat
tgtcacctgatagtacttagaggactacaggaccccagaggatacggacccatgtggacc
gcccgtcacgtgaccaagttcgtgtgtgattgtccacctgacttgaagtttaatgtagac
gccattgacattttgatccgtagccacttgatcaatatgagagagtttgatcttcatctt
gttcagtgtattgacaatggtcacaatctgcaggcacttcactttgctattcagcttgct
aaatacgtttccgatgagaagcacagtccacatgtcacagagaatgatctttatcacaca
attgaagctctaacgaggatagctcacagcaggcagaataatgaaggcttgtcctctttg
ttggaagcctcacacaatggccctccttcccagtctgtcggcggagggcaccacgaaatg
ggtgacaacaaggcacctggagggcctacatctttgacctcgagtgtgtcatcaggtgtg
agctccaatttccatggttacgaggatccacctggtctgcacgaaaaggtggagtacttg
ttacgagaatgggtgcggctttgccaccagcccggagcagggaaggaaagtgagaaggcc
ttctcaacattcgttgccctgcttcatcagcaaggcattctgagaactgatgatctgatc
acaaggtttttccggatcagtactgagttgtgtgtggaggtgacatacagagctttggga
gatcatcccaacagccccaccatggcgagggccaagtgtcacaacaccctggatgcttac
tgtcgtttgatagcgctcctggtgcgtcactcaggagatgcctccaacaatgtgaccaag
attaacctcctcagcagagtccttggcacagtcgctacggtgttattccaagatcatgag
attcgtcacacggagtttcaacagctgccttatcacagaatctttataatgctgcttgta
gagctaaaccaacccgaacccatcctggaagctataaatttccaggtcctgcaaactttt
agcactgtgttccatgccctccggccatcccgtgcatcagggttcgcatacgcctggctt
gagctcatatcgcatcgcctcctgatgtccaagctgcttctaaacacaccgcagcagaag
ggctgggttttgtttcaacagctgctaatcgatcttttcaagtttttggctccattcctg
aggaacgctgagttagctaaacagactcacttgctttataagggtacactacgcgtgttg
ttggtcctgcttcatgacttcccagagttcctatgtgattaccacttcagtttctgtgac
gtcatccctcccaactgtattcagatgaggaatcttatcctaagtgctttccctcggaac
atgagactcccagaccccttcacgccaaatttgaaggttgatttgctgactgacatcgct
cattcgccacgtatcctgacaaactttgcctctgctatccagcctgcgaacttcaaaaag
gatttagattcgtatctgaagacacgtgctccagtaaccttcctgacggaactcagaacg
catttgcaggtatccaatgaagctggaacgcgttacaacgtacctttgatgaatgccttg
gtcctttacgtcggaacgcaagccattacttacattcacagtaagagcggtaccccctcc
atgtcaaccatcactcattcgtcgcacatggacatcttccaaaatctggctgtggatttg
gataccgaaggtcgatacctattcttaaatgcgattgcaaatcagctgcgttatccaaac
agccacacacattacttcagttgtgttctgctgtatctctttgctgaagcaaacacagaa
gccatacaagaacagattacaagggtattgctggagcggttgattgtgaaccgacctcat
ccttggggactactgatcaccttcattgaactcattaagaatcaccagtacaaattctgg
acgcacgaatttgttcactgcgctccggaaatcgaaaagttgttcgaatccgttgcacgt
agctgcatgcagcagaaacaggcaccgcccagagatactgctgaaaaccgagagtga
DBGET
integrated database retrieval system
