Pocillopora damicornis (lace coral): 113682953
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Entry
113682953 CDS
T05773
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113682953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113682953
03041 Spliceosome [BR:
pdam03041
]
113682953
03009 Ribosome biogenesis [BR:
pdam03009
]
113682953
03016 Transfer RNA biogenesis [BR:
pdam03016
]
113682953
Enzymes [BR:
pdam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113682953
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113682953
Spliceosome [BR:
pdam03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113682953
Complex C
U4/U6.U5 tri-SnRNP related factors
113682953
Ribosome biogenesis [BR:
pdam03009
]
Eukaryotic type
Pre-60S particles
Helicases
113682953
Transfer RNA biogenesis [BR:
pdam03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113682953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
113682953
NCBI-ProteinID:
XP_027055949
LinkDB
All DBs
Position
Unknown
AA seq
865 aa
AA seq
DB search
MSLKNKQRVIYTTPIKALSNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRNML
YRGSEVMREVAWVVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWI
AHLHKQPCHVVYTDFRPTPLQHYIYPAGGDGLFLVEDEKGEFREENFQKAMAVIREGGTD
PGNLRGRKGGTKGPSNCFKIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNSGQEK
KLVEEVFNNAIDCLSDEDKTLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIK
ALFATETFALGLNMPARTVVFTNARKFDGKDFRFITSGEYIQMSGRAGRRGIDDRGIVIL
IVDEKMGPDVGKAVLKGQADPLNSAFHLTYNMVLNLLRVEEVNPEIMLEKSFYQFQNYAS
VPGLIEKLKDLETQKESLEIQNEESIMSYYKMRQQINRLGDEMLGYVHQPKYCLPFMQPG
RLVEVKNNDIYFGWGVVLNFQKKANQKSGPTHGETLYVLEVLLNCSSQPLKSADGETPQP
CGPDEKGEMQVVPILLQLVKAISSVRLYIPKDLRSLDSRQSVGKSVKEVQRRFPDGLPML
DPMEDMGIKDDGLKSVIRKIESLEHRMYTHPMHKDPDLKSLYNLCEKKAQIISEIKTVKK
ELRRTKTVLQMDELKSRKRVLRRLGYATASDVIELKGRVACELSSGDELLLTEMIFNGVF
NELTVQQCVALLSCFVFEEKSDEIPKLKEELAGPLRQMQESARRIGKVSEEAKLEIDVET
YVESFKPHIMDVVFAWANGASFSQICKMTDAFEGSVIRCMRRLEELLRQMCQASKAIGNT
ELENKFAEGIIKIKRDIVFAASLYL
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaaaaaacaaacagagagtcatttacactacacctatcaaggctctcagtaac
caaaaataccgtgagttgtatgaggagttccaggatgttggtctgatgacaggagatgtc
acaataaatcccagtgcaagtgccttggtcatgaccacagagattttgagaaatatgctg
tacaggggctctgaggtcatgagggaagtagcctgggttgtctttgatgaaattcactat
atgcgagataaagaaagaggtgtagtttgggaggaaaccatcattcttcttccagacaat
gtacattatgtgtttctctctgctacaattccaaatgccaggcagtttgcagaatggatt
gcgcacctccacaaacagccatgtcatgtggtgtatacagacttcaggcctacgcctctt
caacattatatttacccagctggtggagacggtcttttccttgttgaggatgaaaaggga
gagtttcgtgaggagaattttcaaaaggcaatggctgtcataagagaaggaggaactgac
ccagggaacctgagaggaaggaaaggggggactaaaggtccttcaaattgtttcaaaatt
gtcaaaatgatcatggagaggaatttccagcctgtgatcatcttcagctttagcaagaaa
gaatgtgaggcatatgctttgcagatgtctaaactggactttaattcaggtcaagagaag
aagttggtagaagaagtgtttaataatgctattgactgtttatcagatgaggacaaaact
cttcctcaggtggaacatgttcttcccttgctgaagcgtggtattggcattcatcactct
ggacttcttccaattttaaaggagaccattgaaattctcttctcagaaggtttaatcaaa
gctctttttgccactgaaacatttgctcttggtcttaacatgcctgcaagaacagttgtg
tttacaaatgccagaaagtttgatgggaaagacttcagatttataacatcaggagagtac
attcaaatgagtggcagagctggaagacgtggcattgatgacagagggatagtcattttg
atagtggatgagaaaatgggacctgatgttggaaaagcagtgttaaagggccaagcagat
ccactgaacagtgcttttcatctcacttacaacatggtgttgaacttgctgcgtgtggaa
gaagtgaatcctgagattatgctggagaaatcattttatcagtttcagaattatgcctct
gttcctggcttgattgaaaagctcaaagatcttgaaacccagaaggaatctttggaaatc
caaaatgaagaatccattatgtcatactacaaaatgagacaacagataaatagacttggg
gatgagatgctgggttatgttcatcaacctaagtattgccttccttttatgcaacctgga
cgattagttgaggtgaagaataatgacatttactttggatggggtgtggttctcaatttc
cagaagaaggccaatcaaaagagtggtccaacacatggggagactttgtatgtgttagag
gtgttacttaattgttccagtcagccgttgaagtcagcagatggtgagacacctcagcca
tgcgggcctgatgaaaaaggagaaatgcaggttgtgcccattttgttacaattggtgaaa
gcaataagcagtgtcaggttgtatattcctaaggatttgaggtcactggacagtagacag
agtgttggaaaatcagtcaaggaggtacaacgtcgatttccagatggcctaccaatgctg
gatcctatggaagacatgggaatcaaagatgatggattaaagtctgttataaggaaaata
gagagtttagagcatagaatgtacactcatccaatgcataaagatcctgatctgaaatcc
ctgtacaatttatgtgagaagaaagctcagattatcagtgaaattaaaacagtcaagaag
gaattgaggagaacaaagacagttctgcaaatggatgaactcaagagtaggaaacgagtt
ttgcgaaggttgggatatgccacagcatctgatgtaattgagcttaagggaagagtcgct
tgtgaactaagcagtggggatgaactgctactgacagagatgatctttaatggagttttc
aatgaactgacagttcaacagtgcgtggctttactcagctgttttgtgtttgaagagaag
agtgacgagattcccaaactgaaagaagaactagcaggtcccttgagacaaatgcaggaa
tctgcacgccgtattggaaaggtttcagaagaagctaaacttgaaatagatgtggagaca
tatgtggaatcctttaaacctcatattatggacgtagtgtttgcctgggcaaatggagcc
tcattctctcagatttgtaaaatgactgatgcgtttgaaggcagtgttattcgttgtatg
cgacgcttggaagaactcttgagacaaatgtgtcaagcatccaaagccataggaaacaca
gagttggaaaacaagtttgcagagggaataatcaaaatcaagcgggatatcgtttttgct
gccagtttgtacctctaa
DBGET
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