Pocillopora damicornis (lace coral): 113684413
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Entry
113684413 CDS
T05773
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113684413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113684413
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113684413
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
113684413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
113684413
NCBI-ProteinID:
XP_027057585
LinkDB
All DBs
Position
Unknown
AA seq
303 aa
AA seq
DB search
MSVDARLPKKRKRISALAGLEPRHIVSPGDVITEDTGYMRGHGTYIDGEKLIASVAGIVE
RVNKLICVRPFKTRYNGEVGDVVVGRITEVGQKRWKVETFSRLDSVLLLSSVNLPGGELR
RRSAEDELMMRHFLAEGDLISAEVQSVYSDGSLSLHTRSLKYGKLKEGTLVQVPPSLVKR
CKTHFLNLPCGATVIVGNNGYVWISPLENEDATPADGLANSLENDTNAPRQIQHSDRETI
ARLRNCVLTLTDHGVMLFNTSLQYAYDASLKYLVKELLKPEIREEIVDNVRQLLSQEMLS
CVK
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtggatgcaagattgcccaagaaaaggaaaagaatctcagctttagctggactt
gaaccaaggcacattgtatcaccgggagatgtcataactgaagacacaggatacatgagg
ggtcatggtacatatattgatggggaaaaattgatagcatcagttgctggaatagttgaa
agagtcaacaaattgatatgtgtaagaccatttaagacaagatacaatggagaagttgga
gatgttgtggttggaagaattacagaggttggacagaagagatggaaagtggaaactttt
tccagactggactctgttttgctgctctcttcagtaaatttacctggtggtgaactgaga
cgacgttctgcggaggatgaattgatgatgcgccactttcttgccgagggtgacctgata
agtgcagaggtgcaatcggtatacagcgatggttctctttctttacacacgcgcagtctc
aagtatggaaagcttaaagagggcaccctcgttcaagttccaccttcgctggttaaaagg
tgcaaaactcactttctcaaccttccttgtggtgccacggtaattgtgggtaacaatggt
tatgtttggatatctcctttggaaaacgaagatgccacacccgctgacggcctggccaac
agtctggaaaatgacaccaatgcaccaagacagatccagcactctgatcgcgagacgatt
gcgcgtcttcgaaactgtgtgttgacattgacagaccatggcgtgatgctctttaacacc
tctctacagtatgcttatgacgcatcattgaagtacttggtaaaagagctgctgaagcct
gaaatccgggaagaaatagtcgacaatgttaggcagctcctatcacaagaaatgctctcc
tgtgtaaagtag
DBGET
integrated database retrieval system
