Pocillopora damicornis (lace coral): 113685658
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Entry
113685658 CDS
T05773
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03040
Spliceosome
pdam04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113685658
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113685658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdam03041
]
113685658
04121 Ubiquitin system [BR:
pdam04121
]
113685658
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113685658
Enzymes [BR:
pdam01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113685658
Spliceosome [BR:
pdam03041
]
Complex B
Other components
Prp19 complex
113685658
Complex C
Prp19-CDC5 complex
113685658
Ubiquitin system [BR:
pdam04121
]
Ubiquitin ligases (E3)
U-box type E3
113685658
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
113685658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_SCAP
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_WDR41
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
U-box
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_ACSF4
Beta-prop_Nup120_160
PAS_11
Beta-prop_DCAF12
B-prop_COPA_B_2nd
ATG16
Motif
Other DBs
NCBI-GeneID:
113685658
NCBI-ProteinID:
XP_027058994
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MALFCSISNEVPDHPCVSPSSNCVFERRLIEKYIAENGTDPISGEQLSEEQLIDIKVNSL
IKPRPPSATSIPAILKALQDEWDACMLQSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGMAVAVPSAVPVQMEEAMDVSAQPGEEEGMTEEVLQKLQDKA
TLLTAERKKRGKKVPEDLSTTDEIQSYKPISSHAGLHSASNPGILALDLFAADTSRVITG
GLDKNAVVFYRDSEQVIATLKGHTKKVTNVVYHPHEDLGFTGSADTTIRVWSIPQASCLH
TVKAHDQAVTGLSLHATGDYLLSCSTDQYWAFSDLRTGHVLTRCLSDPNINQGLTCAQFH
PDGLIFGTGTTDSVIKIWDLKEGANVAKFPGHSGPITDISFSENGYYLATSADDSVVKLW
DLRKLKNFKTITLEDRFEVKTLSFDQSGTYLAVGGSEVQIYLVKQWEMIKSFAEHSDVTT
GVKFGKHASFVASVGLDRHLKFYSR
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcttctgttcaatcagcaatgaagttcctgatcacccatgtgtgtcaccatct
tctaactgcgtgtttgagaggaggcttattgaaaagtatattgcggaaaatggcactgat
ccaataagtggtgaacagctttcagaagagcagctgattgatataaaagtcaattcattg
atcaaacctagaccaccatcagcaacaagtattcctgctattctgaaagcacttcaggat
gaatgggatgcctgcatgttgcaaagttttacattacgtcagcaacttcagactgcccga
caagagttgtctcatgctctctaccagcatgatgctgcttgtcgtgtcattgctcgattg
acaaaggaagtcactgcagctcgtgaagctttggcaactctcaaaccacaagctggtatg
gctgtggctgttccttcagctgttccagtgcagatggaggaagctatggatgtatcggct
cagcctggtgaagaagaaggaatgacagaagaagtcctgcagaaattgcaagacaaagcc
actctcctcacagctgaacgtaagaagagaggcaagaaggttccagaggacttgagtaca
acagatgagatacaatcttacaaaccaatctcctcacatgcaggcttacacagtgcaagc
aatcctggaatcttagctttggatttatttgctgcagatacatccagagtcattacaggt
ggcctggacaaaaatgcagtggtgttctatcgtgactcagaacaggtcattgcaactctc
aaaggccacacgaagaaggttacaaatgttgtgtatcatccacatgaggatcttggtttc
actggatcggcagatacgaccatcagggtgtggtccattccacaggcttcatgcttacac
actgttaaggcacatgatcaagctgttactgggcttagtctccatgcaacaggtgactac
ctccttagctgctcaacagatcagtattgggctttctctgatcttagaactggccatgtc
ctcaccaggtgtttatcagatcctaacatcaatcaaggattgacatgtgctcagtttcat
cctgacggtcttatttttggtactggaaccactgacagtgtgataaagatctgggatctc
aaggaaggtgctaatgtagctaaatttccaggacattccggaccaattactgacatttcc
ttctctgaaaatggttactacctagctacatctgcggacgactcagttgtaaaactgtgg
gatttgcgcaaactgaaaaacttcaaaaccataacgcttgaagatagatttgaggttaaa
acactcagttttgatcagagtggtacatatttagccgtgggtggttccgaagttcagatc
tacctcgtcaaacaatgggagatgataaagtcatttgcagaacactctgatgtgacgaca
ggagtgaaatttggcaaacacgcctcattcgttgcgtctgttggtcttgatcgtcatctc
aagttctactcgcgatag
DBGET
integrated database retrieval system
