Pocillopora damicornis (lace coral): 113685695
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Entry
113685695 CDS
T05773
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K19719
collagen type II alpha
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113685695
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdam00536
]
113685695
Glycosaminoglycan binding proteins [BR:
pdam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113685695
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113685695
NCBI-ProteinID:
XP_027059030
LinkDB
All DBs
Position
Unknown
AA seq
1096 aa
AA seq
DB search
MLEPEEQEVASQKIGLPGDPGEKGDRGDQGIAGLAGPRGNRGEPGAPGADGPKGEPGVTG
PRGPPGPPGPIVDVSPTGVPGPDAGPIGHVILSSDSKGPGATRIQEIRGDKGARGAIGEA
GNPGPRGPDGAQGEPGATGAIGSPGTAGSPGSNGSPGEPGQAGSDGQPGPPGQLGDIGDP
GASGQTGLPGAPGLRGVKGDMGSQGERGDRGETGEGGEQGPSGEVGRDGQDGVKGDQGTR
GNPGELGAPGDRGPTGPAGASGPEGAAGSPGPSGNSGSPGALGAKGNRGLMGRAGPRGGR
GAPGAEGAKGPGGEPGNPGKNGAPGEPGFKGEQGTMGPTGPVGLIGNAGPDGLTGIPGEP
GRRGEQGAPGVPGRRGLEGAKGQLGSAGTAGPPGQPGPQGKRGSPGKTGLPGGLGSPGPI
GPSGNRGYSGAEGRQGVKGDSGRNGENGRDGGKGEQGSQGEPGNPGRSGPRGDTGAAGKP
GKSGSQGIPGVDGEDGTPGIPGVPGPQGAPGTPGFSGPKGAVGNAGRDGSIGERGADGLK
GEQGATGEFGKSGTPGLAGRQGFRGDPGAQGSMGATGPLGIQGLPGAPGKLGNPGFPGTR
GKDGSPGLQGERGPRGEQGPIGAQGAAGREGENGLPGSDGLPGDRGAIGASGGSGPEGGP
GLPGLPGRAGFTGTKGDYGEKGNQGSAGEPGRDGEPGGDGAPGAVGQPGLPGPKGTDGTP
GVPGRRGDRGATGGRGSVGAPGSPGIPGSPGPTGPQGLIGLKGNAGEKGSKGESGPFGSK
GEPGDLGTVGFLGAKGNPGSPGASGNRGATGSQGRPGSQGPPGPPGNSGLTGQPGIPGTK
GSRGASGKPGVPGLPGRPGIPGRDGLRGLSGTDGRPGSTGPIGARGPKGDVGPQGLVGIP
GRRGRFGPPGAKGVKGEAGFDGSPGEGGREGYPGARGPSGEKGANGSPGTPGANGENGQS
GIGGTEGDNGPRGSPGVDGTVGVPGPMGSAGAKGPQGPQGDNGDPGRNGNFGQVGKPGNN
GPRGYRGDTGENGLIGTQGDPGYTGEVGRTGPPGIDGEDGPEGRNGSTGPEGPKGGMGAA
GPPGQPGVQGPEVFKC
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgctagaacctgaggaacaagaagtagcatcacagaaaattggactaccgggagatcct
ggagagaaaggagacaggggtgatcaaggaattgcaggacttgctggacctcgtggaaac
cgtggagaaccaggtgcgccaggtgctgatggaccaaaaggagaacctggtgtgactgga
ccacgtgggccgccaggtcctcctgggcccatagttgatgtttctcctacgggagttcct
ggaccagatgcaggtcctattggacatgtcatcctgtctagtgattcaaagggccctgga
gctactaggatccaggaaatcagaggagacaagggtgcccgtggtgctattggagaggca
ggaaatccaggacctagaggacctgatggtgcacaaggagaaccaggagcaacaggtgcc
attggttctcctggaacagcgggaagcccaggatctaatggatctcctggtgaacctgga
caagctggcagtgatggtcaaccaggaccaccaggacagttaggggacataggggaccct
ggagcatctggacaaactggtctgcctggtgcaccaggtcttcgcggtgtgaagggtgac
atgggatcacaaggagagcgtggtgacagaggagaaactggagagggtggagaacaaggt
ccatcaggtgaagtaggaagggatggacaagacggagtaaagggagatcaaggaactcga
ggaaacccaggagaactgggggcacctggtgatagaggtcccacaggaccagcaggagca
agtggacctgagggtgctgcaggttctcctggtccgagtggtaacagtggatcaccaggt
gccttaggggctaaaggaaatcgtggcttgatgggcagagcaggtcccaggggaggcaga
ggagctccaggagctgagggtgcgaaaggaccaggtggagagccaggaaatccaggcaaa
aatggtgccccaggagagccaggttttaaaggagaacagggtacaatgggtcctacagga
cctgttggccttattggaaatgctggaccagatgggcttactggcattcccggtgaacct
ggtaggcgtggagaacagggagctcctggagtacctggaagaagaggactggaaggagcc
aaaggacaattgggtagcgctggaactgcaggtccacctggacaacctgggcctcaagga
aaacggggatcaccaggaaaaacaggactaccaggaggacttggttccccaggtccaata
ggtccttctggtaatcgaggctattctggtgcagagggaaggcaaggagtgaagggtgac
agtggtagaaatggagagaatggacgggatggaggaaaaggagaacagggatcgcaaggg
gaacctggtaatccaggccgatcaggacctcggggagacacaggtgctgcaggaaaacca
ggaaagtcaggctctcaaggaattccgggtgttgatggagaggatggtacccctggaata
cctggggtccctggccctcaaggagcaccaggaacaccaggtttctctggtcctaaagga
gcagtgggtaacgctggaagagatggaagcataggagaacgaggagcagatggtcttaag
ggtgaacaaggtgccacaggagagtttggtaaatcaggcacaccaggactggcgggtcga
caaggtttcagaggagaccctggtgctcaaggaagcatgggagcaacgggaccgcttggt
atccaaggactccccggtgcacctggtaaactaggaaatccaggattccctgggacgcgc
ggcaaagatggctcaccagggttacagggtgaacgtggaccaaggggagagcagggtccc
attggagcccagggagctgccggccgtgaaggcgagaatggattacctggatcagatggt
ctgccgggagacagaggagccataggggcctctggtggatcaggtcctgaagggggaccg
ggtttgccaggtctgcccggtcgagcaggatttactggaactaagggtgattatggagag
aaaggcaaccaaggttctgctggagaacctggcagagatggtgaaccgggcggtgatggt
gccccaggagctgttggtcaaccaggtttgccaggacctaagggcacagacggaacacca
ggagtcccaggaagacgaggagatcgtggagccacgggaggccgcggatcagttggtgcc
cctggaagtccaggaattcctggatccccgggaccaactggccctcaaggacttattgga
ttaaaaggaaatgcaggcgaaaagggttcgaaaggagagtcaggcccatttggatcaaaa
ggagaaccaggggacttgggaactgtgggatttcttggcgccaaaggaaatcctggatct
ccaggagcttctggtaacagaggagccacagggtcacaagggcgacctggatcgcagggc
ccaccgggaccacctggcaatagtggtttgacaggacaaccaggaatcccaggaactaag
ggctcgcgtggcgctagtggtaaaccaggagttccaggcttaccaggaagaccgggaata
cctggacgtgacggcctacggggattatctggaaccgatggaagacctggttcaaccggt
ccaattggagcgcgtgggcccaagggagacgtaggacctcagggcctagttggcattcca
ggaaggcgaggaagattcggtcctcctggagcaaagggcgtaaaaggagaagccggcttt
gatgggagccctggcgagggtggacgggaaggttatcctggagctcgcggaccctctgga
gagaaaggcgcaaatggatcaccgggtacaccgggagcaaacggtgaaaatgggcagagt
ggtattgggggtacagagggtgataatggcccccggggatcccccggcgtggacggaact
gtgggagttcctggaccaatgggatctgctggtgcaaagggaccacaaggtccccaagga
gataatggcgaccctggtagaaacggcaacttcggacaagttggcaaaccaggaaataat
ggaccacgcggttacagaggtgacacgggagaaaacggtctaattggaacacagggtgac
ccaggatataccggtgaagttggcaggacaggtccccctggaattgacggagaggatggc
cctgaaggaagaaacggaagtacgggacctgaaggaccaaagggtggcatgggagccgca
ggccctcccggtcaaccaggagttcaaggaccagaggtatttaaatgctag
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