Pocillopora damicornis (lace coral): 113685699
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Entry
113685699 CDS
T05773
Name
(RefSeq) collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113685699
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdam00536
]
113685699
Glycosaminoglycan binding proteins [BR:
pdam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113685699
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
CDH-cyt
Motif
Other DBs
NCBI-GeneID:
113685699
NCBI-ProteinID:
XP_027059036
LinkDB
All DBs
Position
Unknown
AA seq
1146 aa
AA seq
DB search
PKAWTSFPHQGLRGQRGPAGPAGISGPKGDAGEPGIQGRTGDLGEQGPQGIAGAKGENGR
DGASGKSGVPGEKGSVGVTGETGPQGQRGAPGNAGVPGARGSSGPPGDRGRPGRPGLRGS
KGEKGGQGPPGPIGEPGPSGSTGRRGQTGATGPPGPVGAPGAQGPPGLRGSPGPDGTPGR
KGSTGAPGENGFNGAKGDKGSAGERGEPGRVGAKGPTGQPGVPGRDGKTGAPGDPGADGS
SGAPGQQGAQGNPGPSGLTGPKGSMGEPGVDGDPGAPGAQGAKGETGAPGRRGLTGIPGK
QGRQGERGERGQTGAQGSQGAPGSQGPPGLPGKPGETGASGESGVDGTPGARGERGPQGD
RGPPGAAGAAGDPGEPGTPGADGKAGERGLQGPPGPAGSPGLAGLPGQQGRQGATGAKGS
KGDGGPVGERGPDGKDGEPGQDGMSGPPGPPGPPGEKGEDGVNGQDGTPGSRGDTGPQGP
PGNPGPPGRPGQMGTGGPPGPVGPRGPRGDTGVKGPSGPPGRPGPTGTLGQLGAPGAKGR
QGDQGQQGSPGTQGPPGKPGQPGPPGPPGNTGPSGRDGADGQKGAAGEPGRSGKDGLPGL
PGNNGKDGEPGPPGSDGGPGEVGERGPAGPKGDRGPMGPPGTPGVGGGPGPQGPKGDAGP
PGRNGRSGAPGVPGGRGPPGSKGEPGNPGADGSNGRNGTAGINGRPGLKGERGAPGEPGK
AGKPGPAGIEGPKGDQGPQGPSGEKGRRGRDGVPGKRGAPGAPGNQGPKGEKGEIGVPGE
KGDKGWTGFKGETGPNGPQGDQGAPGVEGSDGPPGLRGSPGENGNPGPPGRNGTMGEPGL
KGPDGDVGETGSSGPEGYQGPPGPPGPPGPPGEPGRPGLLEYLAIANVEKGPSFRLYSSN
GKEMPTREIKPVDILRGLDAKEKEIDLKIKPDGTRKYPARTCYDLFLDHKSYKSGMFWID
PNGGTIKDAIWVFCDKGKNSSCIYPKNSKISDLTIKVQFQDKEDKWLSQAFKESEETELL
EYDAHYTQLNFLKTFSNFANQNITYACRNSMAWEDGRYSIKLKGSNEMEYHATSKTSLRP
KVLSNGCMQSDSTGKWEKTVLEIDTRERNRLPIMDVSAYDIGGKDQDFKLEIGPACFHHT
VLSRTA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
ccaaaagcatggacatcttttcctcatcagggtctaagaggacaaagagggcctgcaggt
ccagcaggtatttcaggacctaaaggggacgctggcgaaccaggtatacaaggaagaact
ggagatctgggtgagcaaggtcctcaaggtatagcaggagcaaagggtgaaaatggaaga
gatggggcatcgggcaagagtggagtaccaggagaaaaaggatcagttggagtcactgga
gaaacaggtccccaaggtcaacgaggagctcctggaaatgctggtgttccaggtgctcga
ggaagttcaggtcctcctggtgacagaggtcgacctggtcgcccaggtttgcgaggatcc
aagggagaaaaaggaggccaaggacctccaggtccaattggggaacctggaccttctggt
tctaccggcagacggggtcaaactggtgcaacgggcccccctggtccagttggtgcacca
ggtgctcagggtcctcctggtcttcgtggatcacctggtcctgatggtactcctggtcga
aagggatcaactggagcacctggagagaatggtttcaatggagcaaagggagataaggga
tctgcaggtgaacgtggtgaacctggccgagttggtgcaaaggggcccacaggtcaacca
ggggtacccggacgagatggcaagactggtgcaccgggtgaccctggagcagatggttca
tcaggagctcctggccagcagggtgcacaagggaatcctggacctagtggacttactgga
ccaaaaggatcaatgggagagccaggtgtggatggtgacccaggggcaccaggtgctcaa
ggagcaaagggtgaaactggagcaccaggcagacgtgggttgactggcattccaggaaaa
cagggaaggcaaggtgaacgcggagaaagaggacagactggtgcacaagggtcccaggga
gcccctggtagtcagggaccaccaggtctacctggaaagcctggagagactggagcatca
ggagagagtggagtggatggaactccaggagcaaggggtgaaagaggccctcaaggagat
cgtggacctccaggtgctgctggtgctgctggagaccctggtgagcctggaacacctggt
gctgacggcaaagctggagagagaggtcttcaaggcccacctggcccagctggttcccct
ggtctggctggtttaccaggacagcaaggacgacaaggggccactggagcaaagggctca
aagggagatggtggacctgttggagaacgagggcctgatgggaaagatggagagccggga
caagatggaatgtcaggacctccaggacctccgggcccaccaggagaaaagggtgaggat
ggtgtgaatggtcaagatggcactcctggtagccggggtgacactggacctcaaggtccg
ccaggaaatcccggtccaccagggagaccaggacaaatgggaactgggggacctccagga
cctgttggccctcgtggaccacgtggagatacgggtgtgaaaggaccttctggacctcct
ggacggccgggccccactggaacactcggccagcttggtgcgcctggagctaagggaaga
caaggagatcagggacagcagggaagtccaggtacccaaggacctccaggaaaaccagga
caaccaggccctcctggacctccaggaaataccgggccatcagggagagatggtgcagat
gggcaaaagggtgcagctggagaaccaggccgatctggtaaagatggcttgcctgggctt
cctggtaacaatggaaaagatggtgagcctgggcctccaggttctgatggtggaccggga
gaagttggagaaagaggacccgctggaccaaagggagacagaggaccaatgggacccccc
ggcacgccaggagttggaggaggtccaggaccacaggggcccaaaggtgacgcaggccct
ccaggccgaaatggacgcagcggtgcaccaggagtacctggaggtcgtggcccaccggga
tcaaagggtgaaccaggaaatcctggagcggacggtagcaatggaagaaatggcacggca
ggtataaacggacgaccaggtttgaagggagagagaggtgccccaggagaaccaggaaaa
gcaggtaaaccaggtcctgctggtattgagggacctaagggggatcagggaccccaagga
ccttcaggagaaaagggacgtcggggaagagatggtgttcctggtaaacgaggtgctcct
ggagccccgggaaatcaaggacccaaaggagagaaaggtgaaattggtgtacctggcgag
aaaggcgacaaaggatggacgggatttaagggagagactggacctaatggcccacagggc
gaccaaggagcaccaggtgttgaaggatcagatggacctccaggactgaggggatcgcca
ggagaaaacggaaatcctggtccaccaggaagaaacggaacaatgggtgaacctggcttg
aaaggacctgatggcgacgtgggagagacaggatcatcgggacctgaaggatatcaagga
ccacccggacctccaggacctccgggacctcctggtgaaccaggtcgtccaggattactt
gagtacttggctattgcaaacgttgaaaaaggtccatcattccgattatactcgagcaat
ggaaaggaaatgccaactcgagaaataaagcccgtggatatactcagagggttagatgca
aaagaaaaagaaattgacctgaaaataaaaccagacggtaccaggaaatatcctgctaga
acgtgttacgatctgttccttgatcacaagagttacaagagcggtatgttctggatcgat
cctaacggtggaacaatcaaggatgcaatctgggttttctgtgacaagggcaagaattcg
tcgtgtatctaccccaagaactcgaaaatctctgaccttacaatcaaagtacaatttcaa
gacaaggaagacaaatggttgagccaagcgtttaaggaaagcgaagagaccgaactgctg
gaatacgacgcccactacacgcagctcaacttcctgaagacctttagcaactttgcaaat
cagaacatcacctacgcctgccgtaactccatggcctgggaagacggaagatactcaatc
aaactcaagggctctaacgaaatggaatatcatgccacatctaagacctcactcagaccc
aaagtactctccaacggttgcatgcaaagtgattctacgggcaaatgggagaaaacagtt
ctagagattgatactagagagaggaatagactacccatcatggacgtttcagcctatgac
atcggcggaaaagatcaagacttcaagcttgaaattggaccagcctgtttccatcacacc
gtcctttctcgtacggcttag
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integrated database retrieval system