Pocillopora damicornis (lace coral): 113685716
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Entry
113685716 CDS
T05773
Name
(RefSeq) collagen alpha-2(I) chain-like
KO
K19719
collagen type II alpha
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam04512
ECM-receptor interaction
pdam04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113685716
04518 Integrin signaling
113685716
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdam00536
]
113685716
Glycosaminoglycan binding proteins [BR:
pdam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113685716
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
vWA_Rv0959
Motif
Other DBs
NCBI-GeneID:
113685716
NCBI-ProteinID:
XP_027059054
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MLRITFLRVLLLGLFGISATTAQRLDDPCILDLAFIIDASGSIEPYWEDVRKFAAGVAKL
VNISSDGSHVGAVKFGETSKIEFGFNEGQNENTVVRNLLNLDPPVPGSRTMLHSALEKAN
DDLFNPQTNSFREDPNVRKVVLIITDGAQTPPEKPDIPADKLKKRGFEIYAIGAGDAKSH
YRELDMLRNKDLFFVKRPSELPTKVVDVAQALCPRSIETTVIGPPGERGAFGLRGDVGAP
GRRGRTGPAGLKGFSGVKGAMGDLGDPGNPGPPGPPGSTAGLPSVPGEKGPLVLVNVVPD
IPGGRIGQPGGSGDTGPKGYEGAFGFAGITGSPGDDGRQGFQGPLGPFGEPGPDGPDGPA
GPKGRPGPEGYRGRRGPMGDPGPLGNPGPVGSKGREGRTGIAGQQGQDGELGDTGDVGKP
GPDGSVGMNGLSGVSGRPGYPGPSGFEGKEGPAGAPGTQGFKGGPGSPGAPGDPGIKGSP
GQGGDTGLMGDTGPTGESGSGGLPGTDGVTGSRGSVGKQGEFGGPGDPGPAGPTGGEGRS
GETGIPGDLGSTGGKGAKGELGRPGSTGSTGDKGPAGLAGPNGARGFQGSPGKQGGRGGA
GSPGRNGETGQRGVRGSEGDPGVMGAMGITGMTGGRGGRGSRGVKGDGGASGLRGPPGIT
GSRGSEGRPGSSGVAGAPGSLGAKGDDGFPGEDGAPGFPGKSGGVGLVGMKGVEGIVGND
GSQGERGSTGPKGESGAPGGQGAAGAPGTMGLQGPAGSQGSTGDVGDEGAPGSAGDAGSA
GFSGRQGPKGSSGSNGVSGKRGRAGEPGLNGVNGDPGLQGLAGLPGDEGGMGEPVCNAFI
RELLQSSDVEFQFFFQFTTNL
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgtataactttccttcgcgtcctgctgctcggtttgtttgggatttcagcgaca
acagcacagcgattggatgacccatgtattcttgacctggcattcatcatagacgcatct
ggtagcatcgagccttattgggaagatgttcggaagtttgccgccggagtcgcgaaactg
gtgaacatatcgtccgatggatcccatgttggagcggttaagttcggcgagacatccaaa
atagaatttgggttcaatgaagggcaaaacgaaaacactgttgttcgaaatttgcttaat
ctagatccccctgttccgggttcaagaaccatgctgcactcagcgctcgaaaaagcaaac
gacgaccttttcaacccacagacaaatagcttccgagaagatcccaatgtacggaaggtt
gttttaattataactgatggtgcgcaaacccctccagaaaaacctgacataccagctgac
aaactgaaaaaaaggggttttgagatttacgccatcggtgccggagatgccaaatcacat
tacagggaattggatatgttaagaaacaaagatttgttctttgtcaaaaggccgagtgaa
cttccaacgaaagttgtcgatgtggcacaagcactctgtccgaggtcgattgaaaccacg
gttattggtcccccaggagagagaggagcattcggccttcggggtgacgtcggggcacca
ggccgtcgcggaagaacagggccagccggattaaagggtttctcaggggtcaaaggtgca
atgggcgaccttggagatccggggaatccaggccctcccggccccccaggatcgacggcc
gggctaccgagtgtacctggcgaaaaaggtccattagttctagttaatgtggtacctgac
attccgggcgggaggatcgggcagccaggaggctctggggatacagggccaaagggatat
gagggggcgttcggttttgccggaataacaggaagtcccggagatgatggacgtcaggga
tttcaaggccccttaggtccttttggggagcctggcccggatggtccagatggacctgcg
ggcccaaagggaagacccggacctgaaggatatagaggacgaaggggaccaatgggtgat
cctggaccattaggcaatcctggtcctgttggatctaagggccgagaaggacgaactgga
atcgctggacagcagggacaggatggtgaactgggtgataccggtgacgttggcaaacca
ggacctgacggatcagtgggtatgaatggattaagcggagtgagcggacggcccggttac
ccaggcccttcaggtttcgagggaaaagaaggacctgctggtgcacctggaactcagggc
tttaaaggaggtcccggcagcccaggagcgccgggtgatccaggaatcaaaggaagccca
ggacagggaggtgacacaggcctcatgggcgataccggacccacaggtgaaagcggatct
ggtggactgccgggaactgacggagtgacgggttctcgcgggtcggttggtaaacaaggg
gaatttggaggcccgggcgatcctggaccagcaggacctacgggaggagagggacgttca
ggagaaaccggcataccaggggatcttggatcaacaggcggcaaaggagcaaagggtgag
ctcggaagaccaggaagcacgggatccactggtgataaaggaccagcgggtcttgcggga
ccaaatggtgcccgaggatttcaaggttcgcccggtaaacagggtggccgtggcggagcg
ggcagtcccggaagaaatggcgaaaccggacaaagaggagtgcggggtagtgaaggagat
ccgggtgttatgggtgcaatgggaataacgggaatgactggaggacgtgggggacgagga
tccagaggtgttaagggagatgggggtgcttcaggcttacgcggtccaccaggaataacc
ggatcaagaggttctgagggcagaccaggatctagtggagttgcaggcgcaccaggaagt
ttgggcgctaaaggcgatgatggttttccaggagaggacggtgcaccgggttttcctggt
aaatctggaggcgttggacttgttggtatgaaaggagttgagggaattgttggaaatgat
ggaagtcaaggggaacgaggatcaactggaccaaagggtgaatcaggtgccccaggaggt
caaggtgcggcaggggcaccaggaaccatgggtctccaaggtcctgcagggtcccaggga
tcaactggggacgttggtgatgagggagctcctggttctgccggtgatgcgggctcagca
ggattcagtggccgccaggggcccaaaggaagctcaggttctaatggagtttctgggaaa
agaggaagagctggtgaacctggccttaacggagtaaatggagatccgggcttgcaagga
ttagctggacttccgggagacgaaggaggcatgggagaacctgtatgtaacgcttttata
cgtgagctcttgcaatcctcggatgttgagtttcaatttttctttcagtttaccacaaat
ttgtga
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