Pocillopora damicornis (lace coral): 113686431
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Entry
113686431 CDS
T05773
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113686431
03036 Chromosome and associated proteins [BR:
pdam03036
]
113686431
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113686431
Chromosome and associated proteins [BR:
pdam03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
113686431
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
S1
SH2
HHH_3
HHH_9
Spt6_S1
Tex_N
Tex_YqgF
S1_RRP5
Transposase_20
PI3K_p85B
Motif
Other DBs
NCBI-GeneID:
113686431
NCBI-ProteinID:
XP_027059849
LinkDB
All DBs
Position
Unknown
AA seq
1651 aa
AA seq
DB search
MSKFGDSEAEEDSLDESLSEKSDDDEDEDEEEGEEEEQADDENDIINDEIEESAGEEEQG
HHGHHHRKRRKADEAEELDEEDLSLIEENLGISIKRKKPRLKKIKELDSDEEGEDQLAGN
AAVKEREAIANQLFEGGDDGGEVAAEPAEAPGDDTYADIDESESEEDVDDFIVDDEGNPI
NRHTKKKRRIPGTLQDSALMEAQDIFGLDFDFDEFEKYGRDDFSSEEEEEDYEDDTEDGA
PRRPKKKSTKKSIYEVFEPSELEKGMLTNKDNEIRTADVPERFQVRDFAVKSTEDGELDD
EADWIYKHAFLDLPISQQQDPLDGDAHSHAKTPKPYSAVAKIREALNLMRNHLYEVPFIA
SYRKEYIEPELNIEDLWKIWEYDEKWSQLRTRKENLHRLFEEMQNYQFNKIQESGDEPLD
DDTRILQPEDVDRLDGVETMEQLKDVYSHFMLYYKNDIPAMWEAKRKKKESEEGKDGDGE
SKTTLPKKKMPAKRDLYAICKQAGVSGLARKFGLTPDQLGENLRDNYQRHETEQHPVEPD
DAAENYLSSTFSTVDQVLEAARHMVAMQIARDPLVRQCVRQTFYERAKLKIRPTKKGKKE
IDESHLCSTFKYIKNKPVKELKGDQFLRMCKAEEDGLLTINIEIDLDKNAGYQTYFDEVK
QLYYRDEFSHLVQEWNTQRTNALSRAFNQMLYPLFEKELKLKLLQEAKNFVIKSCCRRLR
SWIEVAPYQPEQHIDERDYDDSSNTEGLRVLACSFSNSPDTPAFLAMLDGGGQVNDYLRL
KYLLNRRNTNRPKEREDKEKDMQRLKQFILKKRPQVVVVAAEFRATVSVIDDIKMCIAEL
EQENQIPTISVEALDGEVARVFMSSPRAENEFREYPALLRHAVSLGRRIQDPLTEFAALC
VEEDELLCLRLHPYQDQVPKEQLVKSLHQEFVTVVNEVGVDPNRLLEHPHTVSLLQFVCG
LGPRKASSLLKSLRQQCTRLENRSQLVTVCGLAPQVFLNCAGFIKIDTAAISDTTTNYIE
VLDGSRVHPETYEWAKKMAVDALEYDEATMESNPSSALEEILEAPDRLKDLDLDAFAEEL
ERQGYGNKRITLYDIRDELFGQYRERRSPYRSLTVEESFRLMTGETSESLYVGKMVVCTV
TGFANRKPPRDMIDQAQPVRNDETGQWQCPFCLQDAFPDLSEVWTHLDNGSCAGQAIGVR
TRLENGLSGFLPTKMISDKTISSPHDRVKVGMTLHCRVTRVNMERFQLDLTCRSSDLADK
EGKFSLPKDLYYDQDTADKDRKDEEAAKKKANRPKYVKRVIVHPAFKNISFKEAERLLAD
MDQGECIVRPSSKGADHLTVTWKVDEGVYQHVDVREEGKENAFSLGRSLWIDSEEFEDLD
EIIARHVQPMASFAREILNHKNYRAVDGVKAKLEEILQVEKRKAPQRIPYLMSTTKEFPG
KFFLGYLPRVKPRIEYISVTPDGFRYRGRVHATLNGLFRWFKEHFRDPIPGTPRHRMPVT
MSEGNTPYTPGGTPSINSDVDPARLLPQLQQHFPRGINDPKVYSALAAVARQQQDSQKKT
PTQLTPAQWGAAAAQHIQRQKKQRSSQHQSTPTQQTPTQQTPTQQGYQQFPQYGYYQQHQ
DQTQAQTPTTYGYQQTYSGSKSAGKESSKSR
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatttggcgacagcgaagcggaggaagactccttagatgaaagtttgtcagag
aaaagtgacgacgatgaagatgaagacgaagaagaaggagaagaagaggaacaggcagat
gacgagaacgacattataaacgatgaaattgaagaaagcgctggagaagaagagcagggt
catcacggacaccatcataggaaacgaaggaaagctgatgaggcagaggagctcgatgag
gaagatttgtctttgatcgaggagaatcttggcatcagtattaagcggaaaaagcctcgt
ttgaaaaaaataaaagagctcgattctgatgaagaaggggaagatcagttggctggaaat
gctgccgtgaaagagcgagaagcgattgcaaaccagctgtttgagggtggtgatgatggt
ggggaggttgcagcagaaccagctgaggctccaggagatgacacatatgccgacattgat
gaatctgaatcagaagaagatgtggatgattttattgtggatgatgaagggaatcctatt
aacagacatactaagaaaaagagaagaattcctggaacattacaagattctgctttgatg
gaggcacaagatatttttggtcttgactttgactttgatgaatttgagaaatacggaagg
gatgacttctcgtctgaagaagaagaagaagattatgaagatgacactgaggatggtgca
ccaagaaggccaaaaaagaaatcaacgaagaagtctatttacgaggtgtttgaacctagt
gagcttgaaaaaggaatgttgaccaacaaagacaatgaaatcagaactgcagatgtgcct
gaaagatttcaggttcgtgattttgctgtgaagtcaacagaggatggggagctggatgat
gaagcagattggatttataaacatgctttcctggatctgcctatatctcagcaacaggat
cctctggatggtgatgcccactctcatgctaaaacacctaaaccgtacagtgctgttgct
aagattagagaggcattaaacctgatgaggaaccatctatatgaggttccttttatagca
agctacaggaaagaatacattgagcctgaactgaacatcgaagacctgtggaagatttgg
gaatatgatgaaaagtggagccagctgcgtactcgcaaggaaaacctccatcgtctgttt
gaagaaatgcagaattaccaattcaacaaaatccaggagagtggtgatgaaccacttgat
gacgatacaaggatcttacaacccgaagatgttgacagacttgatggagttgaaactatg
gaacagctgaaagatgtgtacagccattttatgttatactacaaaaatgacatcccagcc
atgtgggaggctaagaggaaaaagaaagaatctgaagagggtaaagatggtgatggagaa
tcaaaaaccacactaccaaagaagaaaatgcctgctaaacgcgatctctatgccatatgt
aaacaagcaggtgttagtggtttggcaaggaaatttggtttgacaccagatcagttggga
gagaacttgcgagacaactaccagcgccatgagacagaacagcatcctgttgaaccagat
gatgcagctgagaattacctcagtagtacattttcaactgttgatcaagtcttagaggct
gctcggcatatggtggcaatgcaaattgcacgggatcctcttgttcggcaatgtgtaagg
cagacattctacgaaagagccaaactcaagatcaggcccaccaagaaaggaaagaaggag
attgacgagtctcatctctgcagcacattcaaatacataaaaaacaagccggtcaaggag
ctgaaaggagatcagtttctacgaatgtgtaaagctgaggaggatggacttcttacaata
aacattgaaatcgacctggacaaaaacgcaggataccaaacctattttgatgaagtgaaa
cagttgtattacagggatgaatttagccatctagtgcaagagtggaacacacagagaacg
aatgcgttgtcacgagcctttaatcagatgctatatccactctttgaaaaagaactcaaa
ctcaagctccttcaggaagccaagaattttgttatcaagtcatgctgccggcggctgagg
tcatggattgaagttgctccataccaacccgagcagcatatagacgaaagggattatgat
gacagctctaatactgaaggtctccgggtgctggcgtgttccttctccaacagtccagat
acaccggccttcttggccatgctggacggaggcggccaggtcaatgattacctcagactg
aagtacctgctgaacaggcggaacacaaacagacccaaagaacgagaagacaaggaaaag
gatatgcaaagattaaagcagtttatcctcaagaagcgccctcaggttgtagtcgttgct
gcagaatttcgcgcgactgtatctgtgatagatgatattaaaatgtgcatagcagagctg
gagcaggagaaccaaataccgaccatctctgttgaagctctggatggtgaagtggcccgc
gtgtttatgtcttcgcctcgagcggagaatgagttccgtgagtacccagccctcctgcgt
cacgcagtgtctctcgggcgcaggattcaagacccgttgacagagtttgctgcgttgtgt
gtggaggaagatgaactgctctgtttacggctgcatccgtatcaggaccaagtaccgaaa
gagcagcttgtaaagagtcttcatcaggaattcgttacggttgtaaatgaagtaggggtt
gaccccaatcgcttgttggagcatccccatacagtgtcgctgctacagtttgtgtgtgga
ctgggacctaggaaagcgtcttccttactaaagagtctacgtcagcagtgcacccgactc
gagaaccgctctcagcttgtgaccgtgtgtggcctggctcctcaggtgtttctcaactgc
gcaggttttattaagattgatactgcggccattagcgacacaaccacgaactatatcgag
gttctcgacggttcacgagttcatccggaaacttacgagtgggccaagaaaatggccgtc
gatgcactcgagtacgacgaggcaacgatggagtcgaacccgtcgtcggccttggaagag
attctggaagcccctgacagattaaaagacttggatttggatgcgttcgcggaagaactg
gaacggcaaggttacggaaacaagcgcattacactgtacgacataagagatgagctattc
ggacagtaccgtgagcgtcgctctccttaccgatctctgacggtggaggaaagcttccga
ctgatgacgggtgagactagcgagtctttgtacgtcggcaagatggtggtgtgcaccgta
actggttttgcgaataggaaacctccccgtgatatgatcgatcaggcccagcctgttaga
aatgatgagactggtcagtggcagtgcccgttctgtttgcaagatgcgttccctgatctc
agcgaggtttggacccaccttgataatggcagttgtgccgggcaggccattggtgttcgc
accagactggaaaatggcttatctggattccttcctaccaagatgataagtgataagacc
attagcagtcctcacgacagagtcaaggttgggatgaccctccactgtcgtgtgactcgt
gtcaacatggagagatttcaattggacctcacgtgtcgctcgtcagatctcgcagataaa
gaaggaaagttcagtcttccaaaagatttgtattacgatcaagacacagcagataaagat
aggaaggacgaggaagcggccaaaaagaaagcgaacaggccaaaatacgtcaaacgtgtg
attgtacatccagcatttaaaaacatctcattcaaggaagctgagaggctgttagccgat
atggatcagggggagtgtattgtgagacccagcagtaagggtgctgatcacttgactgtc
acgtggaaggtcgacgaaggagtttatcagcatgttgatgtgcgcgaggaaggaaaagaa
aatgcgttcagtcttggccgttcattgtggatcgacagcgaggaatttgaagatctggac
gagatcattgcacggcatgttcagccgatggcttcatttgcgagagagattctcaatcac
aagaactacagagcggtggacggagtaaaggcaaaactggaagaaattctgcaagtggag
aaacggaaggctccacaaaggatcccctaccttatgagtacaaccaaggagttccctggg
aagttcttcttggggtatcttcctcgtgttaagccacggatagagtatatcagtgtcacc
cccgacggtttcaggtaccgaggaagagttcacgccacgttgaatggcttgtttagatgg
ttcaaagagcacttcagggaccccatacctggtactccccggcacagaatgccagtcacc
atgtccgaaggcaataccccttacaccccaggaggtactccctccattaattctgatgtg
gatcccgctcgactgttacctcagcttcagcagcacttccccaggggaatcaacgaccct
aaggtttactctgcgctggcggctgtcgccaggcaacaacaagactctcagaagaagacc
cccacacagctcacgcctgcgcagtggggtgcagccgcagcccagcatatacagcgtcag
aagaaacaacggtcatcgcagcatcagtcaacgccgacacagcaaacccccacacaacaa
acgccaactcaacagggataccaacaatttccgcaatacggctactatcaacagcatcaa
gatcaaactcaagcccagactcccaccacttacggataccagcagacatattcagggagc
aagtcggctgggaaggaaagtagtaagagtcgatag
DBGET
integrated database retrieval system
