Pocillopora damicornis (lace coral): 113686905
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Entry
113686905 CDS
T05773
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34-like
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
pdam
Pocillopora damicornis (lace coral)
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdam03016
]
113686905
Enzymes [BR:
pdam01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
113686905
Transfer RNA biogenesis [BR:
pdam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
113686905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_int_endo
BBS2_N
Motif
Other DBs
NCBI-GeneID:
113686905
NCBI-ProteinID:
XP_027060392
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MADGAETCVTLFSQSSKVFVWNPEDAEKIRVEYRIVGSLIGSLPRKPKQNHCFSLPLLLS
QAEATLLLNKGLARMFDLPENLPVPSNEEVKTFHELRHDSVVKQRELFEREREEKQVELA
EIIEEGRRRKRKLREKDENVTSPVKKVKSEELEEGNPEKCNQKEEKVANQLDSKGNIDNG
LTTNEESVRKTDSIEAHHIEIELGCKRKDKSSLQRVSPNRDINHEETKALSALGTLIHIP
TIMPSQRLQTLSIAHWTYPHTETEKLHYRVFLDLWEKGYYLTSGVKFGGDLLAYPGDPFR
YHSYFIVIIVPWGKKITPFEMISAGRLGATVKKTALICSINDETDEILYTSIKWSGIS
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgcggaaacctgtgtgactttattctctcaatccagtaaagttttcgtt
tggaaccctgaagatgctgagaaaattcgtgttgaatatcgcatagttggatcactcatt
ggatcactacctcgtaaaccaaaacagaaccattgtttttctttgccgcttcttctttcg
caagcagaggccacgttacttttgaacaagggactggcaaggatgtttgacttaccggaa
aatctcccggttccatcgaatgaagaagttaagacgtttcatgagcttcgccatgacagc
gttgttaaacagagagagttgtttgaaagagaaagagaagaaaagcaggtggaattagca
gaaattatcgaggagggaagaaggaggaagagaaaactgagagagaaagatgaaaatgta
actagtccagtaaaaaaagtgaaaagtgaagaattagaagaaggcaatcctgaaaaatgc
aaccaaaaggaggaaaaagttgctaatcaattggattcgaaaggtaatatagacaatggt
ttgacaactaatgaagaatcagtaagaaaaactgatagcattgaggcccatcacattgaa
attgaattgggttgtaaacgtaaggacaagtctagcttgcagagagtgtcacctaaccgt
gatattaatcatgaggaaacaaaggccttgtctgcccttggaactttaattcacattcca
acaattatgccatcacaaagactgcagactctttcaatagcacattggacatacccccac
acagaaactgaaaagctgcattacagggtatttttggacttatgggaaaaaggatattat
ttaacatctggtgttaaatttggaggagatttactagcatatcctggtgatccattcagg
tatcactcatatttcattgttattattgttccatggggaaagaaaattactccatttgag
atgatctcagctggaagactgggtgctactgttaaaaaaacagcccttatttgttctata
aatgatgagacagatgaaattttgtatacatccatcaagtggagtgggattagttaa
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