Pseudomonas danubii: PFZ56_13510
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Entry
PFZ56_13510 CDS
T11866
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pdan Pseudomonas danubii
Brite
KEGG Orthology (KO) [BR:
pdan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdan03009
]
PFZ56_13510
Enzymes [BR:
pdan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFZ56_13510
Ribosome biogenesis [BR:
pdan03009
]
Prokaryotic type
rRNA helicases
PFZ56_13510
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XHY67944
LinkDB
All DBs
Position
2922273..2923613
Genome browser
AA seq
446 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM
LFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYSGPKKVKASGKAVGVKKKKTDAKGDKKKSVAKAPTKRKTANR
PKSDSLVSQDGLAPLKRRKPQAPVAE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagccgacgccggtgcaagcagcggctattccgctcgcgctgcaagggcgtgacctg
cgggtgacggcacagaccggcagcggcaagaccgcggcctttgtcctgccaatccttaat
cgtctgatcggcccagcgaagatccgcgtcagcatcaagaccctgatcctgttgccgacc
cgggaactggcccagcagaccctcaaggaagtcgagcgtttctcccagttcaccttcatc
aagtccggcctgatcaccggcggtgaagacttcaaggtccaggccgccatgttgcgcaag
gtgccggacatcctcatcggcaccccggggcgcatgctggagcaactcaacgccggcaac
ctggacctcaaagaagtcgaagtgctggtgctcgacgaagccgaccgcatgctcgacatg
ggctttgccgaagacgtgcagcgcctggtggacgaatgcccgaaccgccagcagaccatg
ctgttctccgctaccaccggtggttccggcctgcgcgagatggtcgccaaggtcctcaac
aaccctgagcacctgcaactcaacagtgtcagccagctgaacgaaaccacccgtcagcag
atcatcaccgccgaccacaaccagcacaaagaacagatcgtcaactggctgctggccaac
gagacctaccagaaggccatcgtcttcaccaacacccgggccatggccgaccgcatctat
ggccgcctggtggcccaggactacaaggctttcgtcctgcacggcgagaaggaccagaag
gaccgcaagctggccatcgatcgcttgaagcagggcggggtcaagatcctcgtggccacc
gacgtcgccgcccgtggcctggacgttgatggcctggacctggtgatcaacttcgatatg
ccgcgcagcggcgacgaatacgtgcaccgcatcggtcgtactggccgtgctggcaacgat
ggcctggccatctcgctgatctgccacggcgactggaacctgatgtcgagtatcgagcgc
tacctcaagcagagcttcgagcgccgcaccatcaaggaagtcaaaggcacctacagcggc
ccgaaaaaggtcaaggcgtccggcaaggccgttggcgtgaagaagaaaaagaccgacgcc
aagggcgacaagaaaaagtccgtggccaaggccccgaccaagcgcaagaccgccaaccgg
ccgaaaagcgacagcctggtcagccaggacggtctggcgccgctcaagcgccgcaagcca
caggcgccggtagctgaataa
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