Pseudomonas danubii: PFZ56_18460
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Entry
PFZ56_18460 CDS
T11866
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pdan Pseudomonas danubii
Pathway
pdan00300
Lysine biosynthesis
pdan00470
D-Amino acid metabolism
pdan01100
Metabolic pathways
pdan01110
Biosynthesis of secondary metabolites
pdan01120
Microbial metabolism in diverse environments
pdan01230
Biosynthesis of amino acids
Module
pdan_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pdan00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PFZ56_18460 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PFZ56_18460 (dapF)
Enzymes [BR:
pdan01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
PFZ56_18460 (dapF)
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Paralog
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
XHY63202
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All DBs
Position
complement(3996560..3997354)
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AA seq
264 aa
AA seq
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MPLNFVKMHANGDDFVLIDARGRDNPITAERARALGDRQRGIGFNQLVVLGDCHESAAQL
TFFNADGSSLNTCGSATRGAADLLMEESGATSVQLTTARGLQHCLRLEDQSVSVEMGRPS
FDWRDVPLARELDSLHLPLPGTPAACSMGNPHCSFFVDDLEQLDVAALGPTIESDPLFPH
KTNVHFIQVIDRQTIRLRIWERHGAIPLGSGSCSSAAAVNGIRRGLLDSPVRVLCDGGPV
TVSWDGQGKVRLAGSVTRVFNGSL
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgaactttgtgaagatgcacgccaatggcgacgacttcgtgctgatcgatgcc
cgtggccgcgacaacccgatcaccgctgaacgggccagggccctgggagatcgccagcgc
ggcatcggtttcaatcagttggtggtgctcggcgactgccacgagagcgcggcgcaactg
accttcttcaacgccgatggttccagcctgaacacctgcggcagcgccacccgcggcgcc
gccgacctgctgatggaggaaagcggtgccacctcggtgcagctgacaaccgcccgcggc
ctgcagcactgcctgcgtcttgaggatcagtcggtgtccgtggaaatgggccgaccatcg
ttcgactggcgggacgtccccctggcccgagagctggacagcctgcacctgccgctgcca
ggaacaccggcggcatgcagcatgggcaacccccattgcagttttttcgtcgacgatctg
gagcaactggacgttgccgccctgggtcccacgatcgagagcgacccgctgtttccacac
aagaccaacgtgcacttcatccaggtgatcgaccgccagaccatccgcctgcgcatctgg
gagcgccatggcgccatccccctgggctccggttcctgttccagcgcggcggcggtcaat
ggcatccgtcgcggcttgctcgacagcccggtgcgggtgctgtgcgacggcgggccggtg
acagtgagctgggacggccagggcaaggtgcgcctggccggcagcgtgacccgggtgttc
aacgggtcactgtga
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