Clostridioides difficile 630: CDIF630_00539
Help
Entry
CDIF630_00539 CDS
T03885
Name
(GenBank) putative conjugative transfer protein
Organism
pdc
Clostridioides difficile 630
Pathway
pdc03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
CDIF630_00539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
HigB-like_toxin
UvrD-helicase
DEAD
AAA_19
FtsK_SpoIIIE
DUF3970
Motif
Other DBs
NCBI-ProteinID:
AJP10106
UniProt:
Q188K0
LinkDB
All DBs
Position
488367..490151
Genome browser
AA seq
594 aa
AA seq
DB search
MIDKILKDIKGLFKVQDKVKFLKQNIPYLAFFYIGDIFSHHVRVYVGGDIIDKIFQGILE
INTMNFLPSIHPTDILMGVLVAVLIKFIVYTKGKNAKKFRQGKEYGSARWGNKKDIEPYM
DEKFQNNILLTQTERLTMNGRPANPKYARNKNVLVIGGSGSGKTRFFVKPNLMQMHSSYC
VTDPKGTIVLECGKMLEDNGYEIKILNTINFKKSMKYNPFAYIRSEKDILKLVQTIIANT
KGEGEKAGEDFWVKAEKLYYTALIGYIFYEAPREEKNFATLLDMIDASEVREDDETYMNP
IDRLFEALEKKEPTHFAVKQYKKYKLAAGKTAKSILISCGARLAPFDIQELRDLMQEDEL
ELDTLGDRKTALFVIISDTDDTFNFVVSIMYSQLFNLLCDKADDVYGGRLPIHVRCLLDE
FANIGLIPKFEKLIATIRSREISASIILQAQSQLKVIYKDNADTIVGNCDSTLFLGGKEK
TTLKELSETLGKETIDLYNTSETRSNQKSFGLNYQKTGKELMSQDEITVMDGSKCIFQLR
GVRPFLSDKFDITKHKNYKLLEDYDKKNVFNIESYMKRKGKAKLNRETVITRMQ
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgatagataagatattaaaggacatcaaaggcttatttaaggtgcaagataaggtaaag
tttctaaagcagaacattccctatcttgcatttttctatataggcgatatcttttcacat
catgtaagagtctatgtaggtggcgatattattgacaaaatctttcaagggatattagag
attaacactatgaactttcttccaagcattcatcctacggatattttaatgggagtgtta
gtagctgttttaatcaaatttatcgtatataccaaagggaaaaatgctaaaaagtttaga
caggggaaagagtatggctcagcaagatggggaaataaaaaagacatcgagccgtacatg
gatgaaaagtttcaaaacaatatcttgctcactcaaacagaacgattaactatgaacggt
agacctgctaatccaaagtatgcaagaaataagaatgtacttgtcataggaggatcagga
agtggcaagactcgattttttgtaaaaccaaaccttatgcaaatgcacagcagctattgt
gtaaccgatccaaaaggaacgatagttcttgagtgtggtaaaatgcttgaagataacgga
tatgagataaaaatcttaaataccatcaacttcaaaaagagtatgaaatacaatccattt
gcctatattcgttctgagaaagatatattaaaacttgttcagaccatcattgcaaacacc
aagggcgagggagaaaaagcaggtgaagatttttgggtaaaagccgaaaaactctactat
acagcacttatcggctatatcttctatgaagctccaagagaagaaaagaactttgcaacc
cttcttgatatgatagacgcttcggaagtcagagaagatgatgaaacctatatgaatccg
attgatagactctttgaagcattggaaaagaaagagcctacacactttgcggtgaagcaa
tataaaaagtacaagctggcagccggaaaaactgccaaatcgattcttataagctgtggt
gcaaggcttgctccctttgatattcaggaacttagggacttgatgcaagaagatgaactg
gagcttgatactcttggagatagaaagactgccctctttgttattatctctgatacagat
gatacctttaactttgtagtatctattatgtactctcagttatttaatcttttatgtgat
aaagcggatgatgtgtatggcggaagattacctatccatgtgagatgcttacttgatgaa
tttgcaaacattggtttaatacctaagtttgagaagttaattgcaacaatccgttccaga
gaaatatcagcaagcatcatacttcaagcacaatctcagctaaaggtaatctataaggat
aatgccgatacaatcgtaggtaactgtgatagtaccttgtttcttggtggcaaggaaaag
accacattaaaggaactttctgaaacactgggaaaagaaacgatagatttatataacaca
tcggaaacaaggagtaatcaaaagagctttggacttaattaccaaaagacaggtaaggag
cttatgagccaagatgagattactgtaatggacggtagcaaatgtatctttcagcttaga
ggtgtcagaccttttctttcagataaattcgatattacaaagcacaagaattataagcta
cttgaagattatgataagaagaatgtgtttaatattgagagctatatgaagcgaaaagga
aaagcaaaattaaatagagaaacggttattacaagaatgcagtaa
DBGET
integrated database retrieval system
